Variant report

Variant	rs10273288
Chromosome Location	chr7:147235066-147235067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10223936	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10223972	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10250939	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10257834	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10261388	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10261996	0.91[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs10264004	0.95[JPT][hapmap]
rs10266173	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10269376	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10269610	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10270024	0.86[ASN][1000 genomes]
rs10270032	0.86[ASN][1000 genomes]
rs10272825	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10279399	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10952695	0.86[ASN][1000 genomes]
rs11768141	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13232091	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1859549	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2074713	0.95[JPT][hapmap]
rs2074714	0.94[JPT][hapmap]
rs2074715	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs2190000	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2190001	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2190002	0.84[ASN][1000 genomes]
rs2190003	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2190004	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2190005	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2190006	0.86[ASN][1000 genomes]
rs2190007	0.86[ASN][1000 genomes]
rs2214735	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2240376	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4615480	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6464821	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6464823	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6464824	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6944540	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6944808	0.89[JPT][hapmap]
rs6946882	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6952758	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6957033	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6962824	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6962950	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6966095	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6975841	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs6978578	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6980002	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6980460	0.91[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs851816	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs851817	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs851821	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs851823	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs851824	0.95[JPT][hapmap]
rs851826	0.95[JPT][hapmap]
rs851828	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs929353	0.95[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147233400-147236600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:147233600-147236600	Weak transcription	Muscle Satellite Cultured Cells	--

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