Variant report

Variant	rs6464823
Chromosome Location	chr7:147257318-147257319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147251094..147253018-chr7:147254874..147257649,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10223936	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10223972	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10257834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10261388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10261996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10264004	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10266173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10269376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269610	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270024	0.93[ASN][1000 genomes]
rs10270032	0.93[ASN][1000 genomes]
rs10272825	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273288	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10279399	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10952695	0.93[ASN][1000 genomes]
rs11768141	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232091	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1859549	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074713	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs2074714	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2074715	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2190000	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2190001	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2190002	0.91[ASN][1000 genomes]
rs2190003	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2190004	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2190005	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2190006	0.93[ASN][1000 genomes]
rs2190007	0.93[ASN][1000 genomes]
rs2214735	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2240376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4615480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6464821	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6464824	0.90[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs6944540	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6944808	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs6946882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6952758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6957033	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6962824	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6962950	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6966095	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6975841	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6978578	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6980002	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6980460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851816	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs851817	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs851821	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs851823	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs851824	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs851826	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs851828	0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs929353	0.90[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links