Variant report

Variant	rs10270107
Chromosome Location	chr7:150787046-150787047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10227172	0.85[EUR][1000 genomes]
rs10245199	0.88[MEX][hapmap]
rs10271154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1050734	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11765015	1.00[CEU][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11765200	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773852	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13225215	0.82[EUR][1000 genomes]
rs13239507	0.95[CEU][hapmap];0.92[GIH][hapmap];0.83[EUR][1000 genomes]
rs2069443	0.81[CEU][hapmap];0.81[GIH][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap]
rs2303929	0.81[CEU][hapmap];0.83[MEX][hapmap]
rs28667841	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34812229	0.83[EUR][1000 genomes]
rs4725388	0.95[CEU][hapmap];0.95[GIH][hapmap];0.83[EUR][1000 genomes]
rs6464124	0.85[EUR][1000 genomes]
rs6464125	0.80[EUR][1000 genomes]
rs6464126	0.95[CEU][hapmap];0.95[GIH][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs6464127	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6464128	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6945151	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7798453	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
4	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
6	nsv1031733	chr7:150730999-150790517	Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv889477	chr7:150731698-150837529	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
8	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
9	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv889480	chr7:150736382-150797581	Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
11	nsv1028023	chr7:150738624-150790517	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
12	nsv465214	chr7:150751590-150822192	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
13	nsv609012	chr7:150751590-150822192	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
14	nsv609013	chr7:150751590-150832913	Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
15	nsv465215	chr7:150762871-150825087	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
16	nsv609014	chr7:150762871-150825087	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
17	nsv889481	chr7:150766799-150837529	Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
18	nsv889482	chr7:150766799-150851566	Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
19	nsv889483	chr7:150773165-150787046	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
20	nsv889484	chr7:150774308-150787046	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
21	nsv889485	chr7:150774308-150788304	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
22	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150784000-150787200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:150784000-150787200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:150784000-150787400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr7:150784200-150787200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
5	chr7:150784200-150787400	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr7:150784800-150787200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:150784800-150787200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:150784800-150787200	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr7:150784800-150787200	Flanking Active TSS	Brain Anterior Caudate	brain
10	chr7:150784800-150787200	Flanking Active TSS	Brain Cingulate Gyrus	brain
11	chr7:150784800-150787200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
12	chr7:150784800-150787200	Flanking Active TSS	Colon Smooth Muscle	Colon
13	chr7:150784800-150787200	Flanking Active TSS	HUVEC	blood vessel
14	chr7:150784800-150787400	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr7:150785000-150787200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:150785000-150787200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:150785000-150787200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:150785000-150787200	Flanking Active TSS	Rectal Smooth Muscle	rectum
19	chr7:150785000-150787400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:150785000-150787400	Flanking Active TSS	Fetal Brain Female	brain
21	chr7:150785000-150787400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr7:150785000-150788600	Weak transcription	Small Intestine	intestine
23	chr7:150785000-150812000	Weak transcription	Aorta	Aorta
24	chr7:150785200-150787200	Enhancers	Esophagus	oesophagus
25	chr7:150785200-150787200	Enhancers	Fetal Lung	lung
26	chr7:150785200-150787200	Enhancers	Gastric	stomach
27	chr7:150785200-150787200	Enhancers	Spleen	Spleen
28	chr7:150785200-150787600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr7:150785200-150787600	Bivalent Enhancer	Fetal Thymus	thymus
30	chr7:150785400-150787200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:150785400-150787200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr7:150785400-150787200	Enhancers	Stomach Mucosa	stomach
33	chr7:150785600-150787600	Enhancers	Fetal Heart	heart
34	chr7:150785600-150788200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:150785800-150787200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:150785800-150787200	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
37	chr7:150785800-150787200	Enhancers	A549	lung
38	chr7:150785800-150787200	Genic enhancers	K562	blood
39	chr7:150785800-150787600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:150785800-150789600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr7:150786000-150787200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr7:150786200-150787200	Genic enhancers	Fetal Intestine Small	intestine
43	chr7:150786200-150787200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr7:150786200-150787200	Flanking Active TSS	NHLF	lung
45	chr7:150786200-150787600	Enhancers	Right Ventricle	heart
46	chr7:150786200-150789000	Enhancers	Placenta	Placenta
47	chr7:150786400-150787200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:150786400-150787200	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr7:150786400-150787200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:150786400-150787200	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland

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