Variant report

Variant	rs11773852
Chromosome Location	chr7:150790119-150790120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150788678..150791620-chr7:150838692..150841148,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10227172	0.81[EUR][1000 genomes]
rs10245199	0.84[MEX][hapmap]
rs10270107	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10271154	0.93[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.89[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1050734	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11765015	0.93[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap];0.80[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11765200	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13239507	0.95[CEU][hapmap];0.92[GIH][hapmap]
rs1549760	0.80[MEX][hapmap]
rs2069443	0.81[CEU][hapmap];0.81[GIH][hapmap];0.80[MEX][hapmap]
rs2069456	0.80[MEX][hapmap]
rs2303929	0.81[CEU][hapmap];0.88[MEX][hapmap]
rs28667841	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4725388	0.95[CEU][hapmap];0.95[GIH][hapmap]
rs4725990	0.84[EUR][1000 genomes]
rs57564091	0.82[AMR][1000 genomes]
rs6464124	0.81[EUR][1000 genomes]
rs6464126	0.95[CEU][hapmap];0.95[GIH][hapmap];0.82[EUR][1000 genomes]
rs6464127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945151	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs749319	0.82[EUR][1000 genomes]
rs7798453	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
4	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
6	nsv1031733	chr7:150730999-150790517	Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv889477	chr7:150731698-150837529	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
8	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
9	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv889480	chr7:150736382-150797581	Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
11	nsv1028023	chr7:150738624-150790517	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
12	nsv465214	chr7:150751590-150822192	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
13	nsv609012	chr7:150751590-150822192	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
14	nsv609013	chr7:150751590-150832913	Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
15	nsv465215	chr7:150762871-150825087	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
16	nsv609014	chr7:150762871-150825087	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
17	nsv889481	chr7:150766799-150837529	Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
18	nsv889482	chr7:150766799-150851566	Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
19	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11773852	CENTG3	cis	multi-tissue	Pritchard

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150785000-150812000	Weak transcription	Aorta	Aorta
2	chr7:150786400-150808400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:150786600-150792600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:150786800-150799000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:150787000-150791400	Strong transcription	Hela-S3	cervix
6	chr7:150787000-150791600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:150787000-150796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:150787000-150799400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:150787200-150790200	Enhancers	Colon Smooth Muscle	Colon
10	chr7:150787200-150790400	Weak transcription	NHEK	skin
11	chr7:150787200-150791000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:150787200-150791000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:150787200-150791200	Weak transcription	NHDF-Ad	bronchial
14	chr7:150787200-150791800	Weak transcription	Esophagus	oesophagus
15	chr7:150787200-150792600	Enhancers	Adipose Nuclei	Adipose
16	chr7:150787200-150793000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:150787200-150793000	Weak transcription	HSMMtube	muscle
18	chr7:150787200-150793200	Weak transcription	Psoas Muscle	Psoas
19	chr7:150787200-150800600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:150787200-150801400	Weak transcription	NH-A	brain
21	chr7:150787400-150792200	Weak transcription	HMEC	breast
22	chr7:150787400-150800000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:150787400-150807800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:150787600-150791200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:150787800-150792200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:150787800-150792400	Weak transcription	Ovary	ovary
27	chr7:150787800-150800000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:150787800-150801800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:150787800-150801800	Weak transcription	NHLF	lung
30	chr7:150788200-150790400	Genic enhancers	Brain Germinal Matrix	brain
31	chr7:150788400-150790200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:150788400-150790400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:150788400-150800600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr7:150788600-150791000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:150788600-150791400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr7:150788600-150791600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:150788600-150792400	Strong transcription	HepG2	liver
38	chr7:150788600-150807400	Weak transcription	Fetal Heart	heart
39	chr7:150788800-150790200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:150788800-150790400	Weak transcription	Fetal Intestine Large	intestine
41	chr7:150788800-150790800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr7:150788800-150792200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:150789000-150791200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:150789000-150791400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr7:150789000-150791600	Strong transcription	K562	blood
46	chr7:150789000-150795600	Strong transcription	Fetal Intestine Small	intestine
47	chr7:150789000-150796600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:150789000-150796800	Weak transcription	Stomach Mucosa	stomach
49	chr7:150789000-150798600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr7:150789000-150800200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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