Variant report

Variant	rs10270258
Chromosome Location	chr7:15431218-15431219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:15422858..15425258-chr7:15428818..15431707,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10270169	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699710	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12699712	0.82[ASN][1000 genomes]
rs13221912	0.82[ASN][1000 genomes]
rs13234664	0.89[ASN][1000 genomes]
rs13234866	0.89[ASN][1000 genomes]
rs13242014	0.90[ASN][1000 genomes]
rs13242762	0.85[ASN][1000 genomes]
rs13247611	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34935295	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35049920	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35101265	0.89[ASN][1000 genomes]
rs35127386	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35242791	0.84[ASN][1000 genomes]
rs35459650	0.90[ASN][1000 genomes]
rs4256501	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4272265	0.81[ASN][1000 genomes]
rs4541808	0.81[AFR][1000 genomes]
rs4604326	0.82[ASN][1000 genomes]
rs4613874	0.87[ASN][1000 genomes]
rs56343373	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62439261	0.89[ASN][1000 genomes]
rs62439264	0.85[ASN][1000 genomes]
rs62439265	0.84[ASN][1000 genomes]
rs62441409	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66518669	0.86[ASN][1000 genomes]
rs6942879	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960653	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1021172	chr7:14944318-15548794	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538743	chr7:14944318-15548794	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1028314	chr7:15336831-15555412	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1033428	chr7:15343210-15554763	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1023086	chr7:15368522-15554763	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv538746	chr7:15368522-15554763	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv606295	chr7:15397449-15547950	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016210	chr7:15405382-15434633	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv437537	chr7:15413574-15442630	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1031116	chr7:15428343-15568587	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15430000-15436400	Weak transcription	Liver	Liver

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