Variant report

Variant	rs10270860
Chromosome Location	chr7:101185166-101185167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101183466..101188316-chr7:101456098..101460720,6	MCF-7	breast:
2	chr7:101185071..101186578-chr7:101457268..101458103,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10237510	0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10264271	0.86[CHD][hapmap]
rs10264716	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270473	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279545	0.81[CEU][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs58583915	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6465817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967104	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs7789667	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9886175	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831078	chr7:101094945-101257486	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1796652	chr7:101156017-101219459	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10270860	TRIP6	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101159600-101188200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:101160400-101186000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:101160600-101190400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:101161800-101186000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:101171800-101187800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:101176400-101190800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:101178400-101185800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:101179000-101186000	Weak transcription	Right Ventricle	heart
9	chr7:101179000-101188400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:101179200-101195000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:101181200-101186000	Weak transcription	A549	lung
12	chr7:101181400-101194000	Weak transcription	Spleen	Spleen
13	chr7:101181600-101194000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:101182200-101188400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:101182400-101186200	Weak transcription	Fetal Intestine Small	intestine
16	chr7:101182600-101185800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr7:101182600-101186000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:101182600-101186000	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:101182600-101194000	Weak transcription	HepG2	liver
20	chr7:101183000-101185800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:101183000-101194000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:101183200-101190600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:101183400-101185800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:101183400-101185800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:101183800-101185800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:101184600-101189000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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