Variant report

Variant	rs10279545
Chromosome Location	chr7:101171028-101171029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101169835..101171791-chr7:101181175..101183653,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10237510	0.86[CHB][hapmap];0.86[AMR][1000 genomes]
rs10264271	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10270860	0.81[CEU][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs2898583	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58583915	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6465817	0.81[CEU][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs66775337	0.80[ASN][1000 genomes]
rs66887263	0.80[ASN][1000 genomes]
rs6945961	0.83[YRI][hapmap];0.94[AFR][1000 genomes]
rs6946248	0.86[ASN][1000 genomes]
rs6947735	0.80[YRI][hapmap]
rs6972074	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv429788	chr7:100799565-101178565	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv464660	chr7:100968363-101171028	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv607981	chr7:100968363-101171028	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1021187	chr7:100993420-101178831	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv831078	chr7:101094945-101257486	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv888823	chr7:101109073-101174965	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv1796652	chr7:101156017-101219459	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10279545	TRIP6	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101151000-101181400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:101159600-101188200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:101160200-101178600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:101160400-101178600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:101160400-101186000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:101160600-101190400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:101161800-101186000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:101167200-101184200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:101167800-101177600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:101169800-101171400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:101169800-101172000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:101170000-101183800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:101170600-101172000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:101170800-101172000	Enhancers	Fetal Lung	lung
15	chr7:101170800-101172000	Enhancers	Fetal Muscle Leg	muscle
16	chr7:101170800-101172200	Enhancers	NHLF	lung
17	chr7:101171000-101171200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr7:101171000-101171200	Enhancers	Brain Hippocampus Middle	brain
19	chr7:101171000-101171200	Enhancers	Pancreas	Pancrea
20	chr7:101171000-101171400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
21	chr7:101171000-101171400	Bivalent Enhancer	HSMMtube	muscle
22	chr7:101171000-101171400	Enhancers	NH-A	brain
23	chr7:101171000-101171600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:101171000-101171600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:101171000-101171600	Enhancers	Fetal Stomach	stomach
26	chr7:101171000-101171600	Enhancers	Lung	lung
27	chr7:101171000-101171600	Enhancers	HUVEC	blood vessel
28	chr7:101171000-101171800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:101171000-101171800	Enhancers	Fetal Muscle Trunk	muscle
30	chr7:101171000-101171800	Enhancers	Gastric	stomach
31	chr7:101171000-101171800	Enhancers	Osteobl	bone
32	chr7:101171000-101172000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:101171000-101172000	Enhancers	Liver	Liver

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