Variant report

Variant	rs10271345
Chromosome Location	chr7:20026024-20026025
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10244904	1.00[ASN][1000 genomes]
rs10246719	0.89[ASN][1000 genomes]
rs10247650	0.89[ASN][1000 genomes]
rs10282449	0.89[ASN][1000 genomes]
rs13328356	0.89[ASN][1000 genomes]
rs17362916	0.89[ASN][1000 genomes]
rs2214919	0.89[ASN][1000 genomes]
rs4721857	0.89[ASN][1000 genomes]
rs4721858	0.89[ASN][1000 genomes]
rs62455465	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv887826	chr7:19816240-20033899	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1027445	chr7:19947297-20211733	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv887830	chr7:19970584-20114589	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1027849	chr7:20003094-20084998	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2762658	chr7:20023224-20127561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:20010200-20052000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:20023000-20031400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:20024200-20030800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:20024400-20027400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:20024400-20028000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:20024400-20028200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:20024400-20028200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:20024400-20030400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:20024400-20055400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:20024600-20028200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:20024600-20028200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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