Variant report

Variant	rs13328356
Chromosome Location	chr7:20051287-20051288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10244904	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs10246719	1.00[ASN][1000 genomes]
rs10247650	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10271345	0.89[ASN][1000 genomes]
rs10281815	0.85[ASN][1000 genomes]
rs10282449	1.00[ASN][1000 genomes]
rs11763267	0.85[ASN][1000 genomes]
rs17362916	1.00[ASN][1000 genomes]
rs2214919	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs38149	0.83[EUR][1000 genomes]
rs4721857	1.00[ASN][1000 genomes]
rs4721858	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1027445	chr7:19947297-20211733	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv887830	chr7:19970584-20114589	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1027849	chr7:20003094-20084998	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2762658	chr7:20023224-20127561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:20010200-20052000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:20024400-20055400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:20040600-20058800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:20045200-20055200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:20046200-20055400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:20047000-20055600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:20048800-20058200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:20050400-20051400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:20050400-20052200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:20051000-20053200	Weak transcription	GM12878-XiMat	blood
11	chr7:20051000-20054600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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