Variant report

Variant	rs10271407
Chromosome Location	chr7:129617726-129617727
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10231719	0.80[AMR][1000 genomes]
rs10246708	1.00[ASN][1000 genomes]
rs10247295	1.00[ASN][1000 genomes]
rs2177773	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28563772	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4580987	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4606000	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59117588	0.84[EUR][1000 genomes]
rs62489404	0.80[AMR][1000 genomes]
rs6467273	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467274	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6945757	1.00[ASN][1000 genomes]
rs6949020	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959601	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975656	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975965	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778194	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805545	1.00[ASN][1000 genomes]
rs7805829	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831129	chr7:129525406-129702477	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129598800-129629600	Weak transcription	Right Atrium	heart
2	chr7:129614600-129623800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:129615600-129623800	Weak transcription	Hela-S3	cervix
4	chr7:129616600-129618800	Enhancers	Placenta	Placenta
5	chr7:129617200-129617800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:129617200-129617800	Enhancers	HepG2	liver
7	chr7:129617400-129617800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:129617400-129618000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:129617400-129618000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:129617400-129618000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr7:129617600-129618000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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