Variant report

Variant	rs6945757
Chromosome Location	chr7:129611332-129611333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129591176..129593761-chr7:129608372..129611572,6	MCF-7	breast:
2	chr7:129609336..129611503-chr7:129646560..129648430,2	MCF-7	breast:
3	chr7:129557764..129560612-chr7:129608880..129612426,3	K562	blood:
4	chr7:129609229..129611456-chr7:129616852..129619054,2	MCF-7	breast:
5	chr7:129603729..129606514-chr7:129609677..129611589,2	MCF-7	breast:
6	chr7:129610210..129612091-chr7:129616176..129618728,2	MCF-7	breast:
7	chr7:129609919..129611470-chr7:129613691..129616590,2	MCF-7	breast:
8	chr7:129588800..129594558-chr7:129608389..129611367,9	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10246708	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10247295	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271407	1.00[ASN][1000 genomes]
rs2177773	1.00[ASN][1000 genomes]
rs28563772	1.00[ASN][1000 genomes]
rs4580987	1.00[ASN][1000 genomes]
rs4606000	1.00[ASN][1000 genomes]
rs6467273	1.00[ASN][1000 genomes]
rs6949020	1.00[ASN][1000 genomes]
rs6959601	1.00[ASN][1000 genomes]
rs6975656	1.00[ASN][1000 genomes]
rs6975965	1.00[ASN][1000 genomes]
rs7778194	1.00[ASN][1000 genomes]
rs7805545	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805829	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv831129	chr7:129525406-129702477	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129598800-129629600	Weak transcription	Right Atrium	heart
2	chr7:129608600-129611400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:129608600-129611400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:129608600-129611400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:129608600-129611400	Enhancers	Esophagus	oesophagus
6	chr7:129609800-129611400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr7:129610800-129611400	Enhancers	NHEK	skin
8	chr7:129611000-129612400	Weak transcription	NH-A	brain
9	chr7:129611000-129613400	Weak transcription	Hela-S3	cervix
10	chr7:129611000-129613600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:129611000-129613600	Weak transcription	A549	lung
12	chr7:129611000-129613800	Weak transcription	HepG2	liver
13	chr7:129611000-129614000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:129611000-129616600	Weak transcription	Placenta	Placenta
15	chr7:129611200-129613600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:129611200-129614200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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