Variant report

Variant	rs10271688
Chromosome Location	chr7:103124483-103124484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10085862	0.82[AFR][1000 genomes]
rs10156111	1.00[AMR][1000 genomes]
rs10236643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28805347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60512397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103118400-103138000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:103121400-103127000	Strong transcription	HepG2	liver
3	chr7:103121800-103130800	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:103122400-103126800	Weak transcription	Brain Angular Gyrus	brain
5	chr7:103122400-103128000	Weak transcription	K562	blood
6	chr7:103122800-103128800	Weak transcription	Brain Substantia Nigra	brain
7	chr7:103122800-103141000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:103123600-103130000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:103123800-103130000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:103124200-103129200	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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