Variant report

Variant	rs10251367
Chromosome Location	chr7:103119961-103119962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10085862	0.82[AFR][1000 genomes]
rs10156111	1.00[AMR][1000 genomes]
rs10236643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259671	1.00[ASW][hapmap];0.82[YRI][hapmap]
rs10260917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270524	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13362860	1.00[MKK][hapmap]
rs28446187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28805347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60512397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10251367	IFT46	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103103600-103121400	Weak transcription	HepG2	liver
2	chr7:103115800-103121200	Weak transcription	K562	blood
3	chr7:103118400-103138000	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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