Variant report

Variant	rs13362860
Chromosome Location	chr7:103023883-103023884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10229096	1.00[AMR][1000 genomes]
rs10232975	1.00[AMR][1000 genomes]
rs10251367	1.00[MKK][hapmap]
rs10273883	1.00[CHB][hapmap]
rs13362833	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4604353	1.00[AMR][1000 genomes]
rs72655395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103009000-103029200	Weak transcription	Spleen	Spleen
2	chr7:103021400-103027400	Weak transcription	Stomach Mucosa	stomach
3	chr7:103021600-103027600	Weak transcription	HepG2	liver
4	chr7:103022600-103024000	Enhancers	K562	blood
5	chr7:103022600-103033200	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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