Variant report

Variant	rs10272132
Chromosome Location	chr7:10978274-10978275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr7:10978224-10978531	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr7:10978132-10978661	K562	blood:	n/a	n/a
3	STAT3	chr7:10978032-10978364	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:10978101..10982429-chr7:11011509..11017731,20	K562	blood:
2	chr7:10976808..10978708-chr7:10978899..10981503,2	MCF-7	breast:
3	chr7:10975906..10982429-chr7:11007978..11018673,26	K562	blood:
4	chr7:10977305..10982144-chr7:11011875..11016071,10	MCF-7	breast:
5	chr7:10978242..10981238-chr7:11011671..11015550,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271185	TF binding region
NDUFA4	TF binding region
ENSG00000189043	Chromatin interaction
ENSG00000271185	Chromatin interaction
ENSG00000106443	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12532975	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533265	1.00[ASN][1000 genomes]
rs12537541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12539905	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540053	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540752	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17163781	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163788	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17163792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163795	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73678313	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1018905	chr7:10679889-10980691	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	esv2752140	chr7:10817060-11029748	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv464364	chr7:10904752-10988866	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv606193	chr7:10904752-10988866	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv887601	chr7:10912949-11049523	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
18	nsv1027289	chr7:10976057-10992462	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:10963200-10978400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:10969200-10979000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:10969600-10978400	Weak transcription	Colonic Mucosa	Colon
4	chr7:10970800-10978400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:10971200-10979200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:10971400-10978600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:10972400-10978400	Weak transcription	Stomach Mucosa	stomach
8	chr7:10972600-10978400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:10975600-10979000	Weak transcription	Small Intestine	intestine
10	chr7:10976600-10978400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:10976800-10978400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:10976800-10979000	Weak transcription	Esophagus	oesophagus
13	chr7:10977000-10978400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr7:10977000-10980800	Active TSS	Aorta	Aorta
15	chr7:10977200-10978400	Weak transcription	Thymus	Thymus
16	chr7:10977200-10978800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr7:10977200-10979000	Weak transcription	Gastric	stomach
18	chr7:10977200-10979000	Weak transcription	Lung	lung
19	chr7:10977200-10979000	Weak transcription	Pancreas	Pancrea
20	chr7:10977400-10978400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:10977400-10978400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr7:10977400-10978400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:10977400-10978400	Enhancers	Colon Smooth Muscle	Colon
24	chr7:10977400-10978400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:10977400-10978400	Weak transcription	Fetal Muscle Leg	muscle
26	chr7:10977400-10978400	Weak transcription	Fetal Thymus	thymus
27	chr7:10977400-10978400	Weak transcription	Left Ventricle	heart
28	chr7:10977400-10978800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr7:10977400-10979000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:10977400-10979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:10977400-10979200	Weak transcription	Spleen	Spleen
32	chr7:10977400-10980800	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr7:10977400-10980800	Active TSS	Right Atrium	heart
34	chr7:10977600-10978400	Enhancers	Primary T cells from cord blood	blood
35	chr7:10977600-10978800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:10977600-10978800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:10977600-10981000	Active TSS	GM12878-XiMat	blood
38	chr7:10977800-10978400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
39	chr7:10977800-10978400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr7:10977800-10978400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr7:10977800-10978400	Weak transcription	Placenta	Placenta
42	chr7:10977800-10978400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr7:10977800-10978800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:10977800-10978800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr7:10977800-10980800	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr7:10977800-10980800	Active TSS	Right Ventricle	heart
47	chr7:10978000-10978400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr7:10978000-10978400	Enhancers	Adipose Nuclei	Adipose
49	chr7:10978000-10978400	Enhancers	Brain Germinal Matrix	brain
50	chr7:10978000-10978400	Enhancers	Fetal Heart	heart

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