Variant report

Variant	rs17163781
Chromosome Location	chr7:10971416-10971417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:10970436..10972192-chr7:11007402..11009320,2	K562	blood:
2	chr7:10966685..10968984-chr7:10971328..10972857,2	K562	blood:
3	chr7:10958230..10961956-chr7:10970091..10974620,4	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10272132	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532975	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533265	1.00[ASN][1000 genomes]
rs12537541	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12539905	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540053	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540752	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17163788	1.00[ASN][1000 genomes]
rs17163792	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163795	1.00[ASN][1000 genomes]
rs73678313	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1018905	chr7:10679889-10980691	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	esv2752140	chr7:10817060-11029748	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv1017291	chr7:10853615-10971712	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
13	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv464364	chr7:10904752-10988866	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv606193	chr7:10904752-10988866	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv887601	chr7:10912949-11049523	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:10958000-10972200	Weak transcription	Ovary	ovary
2	chr7:10959400-10971800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:10959800-10971600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:10960200-10971600	Weak transcription	Left Ventricle	heart
5	chr7:10960400-10974600	Weak transcription	Fetal Heart	heart
6	chr7:10962600-10971600	Weak transcription	K562	blood
7	chr7:10963200-10978400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:10963600-10971600	Weak transcription	Dnd41	blood
9	chr7:10963800-10972200	Weak transcription	Placenta	Placenta
10	chr7:10964200-10975200	Weak transcription	Esophagus	oesophagus
11	chr7:10964400-10971600	Weak transcription	Fetal Lung	lung
12	chr7:10966600-10971600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:10967000-10975000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:10967000-10975000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:10967400-10971600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:10967400-10972200	Weak transcription	HepG2	liver
17	chr7:10967600-10971600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:10968200-10972000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:10968200-10973600	Weak transcription	Aorta	Aorta
20	chr7:10968400-10971800	Weak transcription	Small Intestine	intestine
21	chr7:10968400-10974600	Weak transcription	Brain Angular Gyrus	brain
22	chr7:10968400-10975000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr7:10968600-10971600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:10968600-10974200	Weak transcription	Colon Smooth Muscle	Colon
25	chr7:10968800-10971600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:10968800-10971600	Weak transcription	Liver	Liver
27	chr7:10968800-10971600	Weak transcription	Fetal Stomach	stomach
28	chr7:10968800-10971600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:10968800-10974600	Weak transcription	Fetal Intestine Small	intestine
30	chr7:10968800-10974800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr7:10968800-10975000	Weak transcription	Brain Substantia Nigra	brain
32	chr7:10969000-10971600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:10969000-10971600	Weak transcription	HSMMtube	muscle
34	chr7:10969000-10971600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr7:10969000-10972200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:10969000-10974600	Weak transcription	Brain Anterior Caudate	brain
37	chr7:10969200-10971600	Weak transcription	Brain Hippocampus Middle	brain
38	chr7:10969200-10971600	Weak transcription	Fetal Intestine Large	intestine
39	chr7:10969200-10971800	Weak transcription	Primary B cells from cord blood	blood
40	chr7:10969200-10974800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr7:10969200-10975000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:10969200-10979000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:10969600-10971800	Weak transcription	Right Ventricle	heart
44	chr7:10969600-10976400	Weak transcription	Pancreas	Pancrea
45	chr7:10969600-10978400	Weak transcription	Colonic Mucosa	Colon
46	chr7:10969800-10971600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr7:10969800-10971600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:10969800-10971600	Weak transcription	GM12878-XiMat	blood
49	chr7:10969800-10971600	Weak transcription	HUVEC	blood vessel
50	chr7:10969800-10971600	Weak transcription	NHEK	skin

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