Variant report

Variant	rs10272404
Chromosome Location	chr7:137589622-137589623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137586611..137590329-chr7:137683415..137689120,5	MCF-7	breast:
2	chr7:137587289..137589921-chr7:137595716..137597965,2	MCF-7	breast:
3	chr7:137587845..137589721-chr7:137692660..137694705,36	K562	blood:
4	chr7:137587919..137589974-chr7:138035321..138037174,2	K562	blood:
5	chr7:137584438..137586090-chr7:137588352..137591212,2	MCF-7	breast:
6	chr7:137587081..137590120-chr7:137692557..137694516,4	MCF-7	breast:
7	chr7:137588477..137590642-chr7:137638045..137640393,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122787	Chromatin interaction
ENSG00000182158	Chromatin interaction
ENSG00000237243	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10232374	1.00[EUR][1000 genomes]
rs10279567	1.00[EUR][1000 genomes]
rs11977277	1.00[TSI][hapmap]
rs12112479	1.00[EUR][1000 genomes]
rs1871214	1.00[MEX][hapmap]
rs56180308	1.00[EUR][1000 genomes]
rs56206871	1.00[EUR][1000 genomes]
rs56249419	1.00[EUR][1000 genomes]
rs56364819	1.00[EUR][1000 genomes]
rs58021602	0.92[EUR][1000 genomes]
rs58643157	1.00[EUR][1000 genomes]
rs58766863	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58888708	1.00[EUR][1000 genomes]
rs59690824	0.85[EUR][1000 genomes]
rs60066950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60325918	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61652269	1.00[EUR][1000 genomes]
rs73729092	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73729518	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73729519	1.00[EUR][1000 genomes]
rs73729520	1.00[EUR][1000 genomes]
rs73729521	0.85[EUR][1000 genomes]
rs73729522	1.00[EUR][1000 genomes]
rs73729523	1.00[EUR][1000 genomes]
rs7786632	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137575400-137591800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:137581000-137589800	Weak transcription	Spleen	Spleen
3	chr7:137584200-137601000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:137584200-137612000	Weak transcription	Fetal Brain Male	brain
5	chr7:137584400-137589800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:137584400-137590200	Weak transcription	Small Intestine	intestine
7	chr7:137584400-137591800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:137584400-137593200	Strong transcription	Muscle Satellite Cultured Cells	--
9	chr7:137584400-137597200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr7:137584400-137601600	Strong transcription	Fetal Intestine Large	intestine
11	chr7:137584600-137591600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:137584600-137591600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:137584600-137592800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:137584600-137593000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:137584600-137593400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:137584600-137604800	Weak transcription	Right Atrium	heart
17	chr7:137584800-137593000	Strong transcription	Ovary	ovary
18	chr7:137585000-137604800	Weak transcription	Psoas Muscle	Psoas
19	chr7:137585000-137605800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:137585200-137591600	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:137585200-137601000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:137585200-137606200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:137586000-137590200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:137586200-137589800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:137586200-137589800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:137586200-137589800	Weak transcription	Esophagus	oesophagus
27	chr7:137586200-137589800	Weak transcription	Gastric	stomach
28	chr7:137586200-137590200	Weak transcription	Primary T cells from cord blood	blood
29	chr7:137586200-137590200	Weak transcription	HUVEC	blood vessel
30	chr7:137586200-137592600	Weak transcription	Right Ventricle	heart
31	chr7:137586200-137599200	Weak transcription	HMEC	breast
32	chr7:137587000-137590400	Enhancers	Fetal Heart	heart
33	chr7:137587600-137600200	Strong transcription	Left Ventricle	heart
34	chr7:137587800-137591800	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr7:137588000-137589800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr7:137588000-137590200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:137588200-137589800	Enhancers	Brain Substantia Nigra	brain
38	chr7:137588200-137590000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:137588400-137590400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr7:137588400-137590400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:137588400-137590400	Genic enhancers	Fetal Muscle Leg	muscle
42	chr7:137588600-137589800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:137588600-137589800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:137588600-137590000	Genic enhancers	Fetal Stomach	stomach
45	chr7:137588600-137590200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:137588600-137590400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:137588600-137590800	Strong transcription	Thymus	Thymus
48	chr7:137588600-137593200	Strong transcription	Aorta	Aorta
49	chr7:137588800-137589800	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr7:137588800-137590200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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