Variant report

Variant	rs11977277
Chromosome Location	chr7:137584598-137584599
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137340758..137342211-chr7:137583440..137584629,9	MCF-7	breast:
2	chr7:137584438..137586090-chr7:137588352..137591212,2	MCF-7	breast:
3	chr19:40298507..40299507-chr7:137584024..137584719,2	MCF-7	breast:
4	chr7:137570597..137573428-chr7:137582615..137585579,3	K562	blood:
5	chr3:156876358..156877967-chr7:137583930..137585430,2	MCF-7	breast:
6	chr7:137583170..137588345-chr7:137688405..137691754,4	K562	blood:
7	chr7:137340756..137341673-chr7:137583558..137584733,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10223970	1.00[CHB][hapmap]
rs10267096	1.00[CHB][hapmap]
rs10272404	1.00[TSI][hapmap]
rs10272604	1.00[CHB][hapmap]
rs1677499	0.86[YRI][hapmap]
rs17169433	1.00[GIH][hapmap]
rs28370936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56200577	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57652043	1.00[EUR][1000 genomes]
rs58258788	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58861639	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7786386	1.00[ASN][1000 genomes]
rs7786632	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs7801988	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137558800-137588400	Weak transcription	Stomach Mucosa	stomach
2	chr7:137570400-137585800	Weak transcription	Hela-S3	cervix
3	chr7:137570600-137585400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:137571800-137588200	Weak transcription	Brain Angular Gyrus	brain
5	chr7:137572000-137585800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:137575400-137591800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:137578400-137588200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:137579400-137588200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:137580000-137585000	Weak transcription	HMEC	breast
10	chr7:137580000-137588400	Weak transcription	Fetal Kidney	kidney
11	chr7:137581000-137588400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:137581000-137589800	Weak transcription	Spleen	Spleen
13	chr7:137581600-137584800	Weak transcription	Ovary	ovary
14	chr7:137582000-137584800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:137583200-137584800	Enhancers	Primary B cells from cord blood	blood
16	chr7:137583400-137584600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:137583400-137584600	Enhancers	Brain Anterior Caudate	brain
18	chr7:137583400-137584600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr7:137583400-137584600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr7:137583400-137584600	Enhancers	Dnd41	blood
21	chr7:137583400-137584800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:137583400-137585000	Genic enhancers	Brain Hippocampus Middle	brain
23	chr7:137583800-137584600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:137583800-137584600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:137583800-137584600	Enhancers	NHDF-Ad	bronchial
26	chr7:137583800-137584800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr7:137583800-137584800	Genic enhancers	Osteobl	bone
28	chr7:137583800-137585000	Genic enhancers	Liver	Liver
29	chr7:137583800-137585000	Enhancers	Psoas Muscle	Psoas
30	chr7:137584000-137584600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr7:137584000-137584600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:137584000-137584600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:137584000-137584600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr7:137584000-137584600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
35	chr7:137584000-137584600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:137584000-137584600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:137584000-137584600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr7:137584000-137584600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr7:137584000-137584600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr7:137584000-137584600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:137584000-137584600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:137584000-137584600	Weak transcription	Brain Substantia Nigra	brain
43	chr7:137584000-137584600	Weak transcription	HSMM	muscle
44	chr7:137584000-137584600	Genic enhancers	HUVEC	blood vessel
45	chr7:137584000-137585000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr7:137584000-137585000	Genic enhancers	Duodenum Smooth Muscle	Duodenum
47	chr7:137584000-137585000	Genic enhancers	Placenta	Placenta
48	chr7:137584000-137585000	Enhancers	Left Ventricle	heart
49	chr7:137584000-137585200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr7:137584000-137585200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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