Variant report

Variant	rs17169433
Chromosome Location	chr7:137456458-137456459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CREB3L2-1	chr7:137456345-137456939	NONHSAT123587

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11977277	1.00[GIH][hapmap]
rs57189840	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57690174	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57750904	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59328875	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59490500	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59512157	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60594385	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61190658	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61344088	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462645	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462663	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1794849	chr7:137453147-137456707	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
3	nsv511992	chr7:137453319-137457163	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
4	esv3338015	chr7:137454237-137456785	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	esv3412977	chr7:137454562-137456635	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137441000-137464400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137453400-137459000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:137453600-137456600	Weak transcription	NHLF	lung
4	chr7:137453600-137457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:137453600-137457600	Weak transcription	Brain Angular Gyrus	brain
6	chr7:137453800-137457000	Weak transcription	HMEC	breast
7	chr7:137453800-137457400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:137454000-137456600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:137454000-137457600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:137454000-137457600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:137454000-137459200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:137454000-137459200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:137454000-137459200	Weak transcription	Aorta	Aorta
14	chr7:137454000-137459400	Weak transcription	Esophagus	oesophagus
15	chr7:137455800-137456600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr7:137455800-137457400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:137455800-137458200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr7:137455800-137460400	Enhancers	NHDF-Ad	bronchial
19	chr7:137455800-137461000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:137456000-137456600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:137456000-137456600	Enhancers	NH-A	brain
22	chr7:137456000-137456800	Enhancers	Adipose Nuclei	Adipose
23	chr7:137456000-137458600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:137456000-137459600	Enhancers	HSMMtube	muscle
25	chr7:137456200-137456600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:137456200-137456800	Enhancers	Osteobl	bone
27	chr7:137456200-137459400	Enhancers	HSMM	muscle
28	chr7:137456400-137456600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:137456400-137456600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:137456400-137458200	Enhancers	Brain Hippocampus Middle	brain
31	chr7:137456400-137458400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:137456400-137458400	Enhancers	Brain Anterior Caudate	brain
33	chr7:137456400-137458400	Enhancers	NHEK	skin
34	chr7:137456400-137458800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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