Variant report

Variant	rs56200577
Chromosome Location	chr7:137586080-137586081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137584438..137586090-chr7:137588352..137591212,2	MCF-7	breast:
2	chr7:137583170..137588345-chr7:137688405..137691754,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11977277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57652043	1.00[EUR][1000 genomes]
rs58258788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58861639	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7786386	1.00[ASN][1000 genomes]
rs7786632	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137558800-137588400	Weak transcription	Stomach Mucosa	stomach
2	chr7:137571800-137588200	Weak transcription	Brain Angular Gyrus	brain
3	chr7:137575400-137591800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:137578400-137588200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:137579400-137588200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:137580000-137588400	Weak transcription	Fetal Kidney	kidney
7	chr7:137581000-137588400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:137581000-137589800	Weak transcription	Spleen	Spleen
9	chr7:137584000-137588200	Strong transcription	Fetal Intestine Small	intestine
10	chr7:137584000-137588600	Strong transcription	Fetal Stomach	stomach
11	chr7:137584200-137586200	Genic enhancers	Rectal Smooth Muscle	rectum
12	chr7:137584200-137586400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr7:137584200-137588600	Strong transcription	HepG2	liver
14	chr7:137584200-137588600	Strong transcription	HSMMtube	muscle
15	chr7:137584200-137588800	Strong transcription	NHEK	skin
16	chr7:137584200-137601000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:137584200-137612000	Weak transcription	Fetal Brain Male	brain
18	chr7:137584400-137586200	Strong transcription	Esophagus	oesophagus
19	chr7:137584400-137586200	Strong transcription	NHLF	lung
20	chr7:137584400-137586400	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr7:137584400-137586600	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:137584400-137587400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:137584400-137588200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:137584400-137588200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:137584400-137588200	Strong transcription	Duodenum Mucosa	Duodenum
26	chr7:137584400-137588200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:137584400-137588400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr7:137584400-137588400	Strong transcription	Stomach Smooth Muscle	stomach
29	chr7:137584400-137588600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:137584400-137588600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:137584400-137588600	Weak transcription	Aorta	Aorta
32	chr7:137584400-137588600	Strong transcription	NH-A	brain
33	chr7:137584400-137589000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr7:137584400-137589800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:137584400-137590200	Weak transcription	Small Intestine	intestine
36	chr7:137584400-137591800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:137584400-137593200	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr7:137584400-137597200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr7:137584400-137601600	Strong transcription	Fetal Intestine Large	intestine
40	chr7:137584600-137586200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:137584600-137586200	Strong transcription	Brain Substantia Nigra	brain
42	chr7:137584600-137586200	Strong transcription	HUVEC	blood vessel
43	chr7:137584600-137586600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:137584600-137587600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr7:137584600-137587800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr7:137584600-137587800	Weak transcription	Fetal Thymus	thymus
47	chr7:137584600-137588000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr7:137584600-137588200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr7:137584600-137588200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr7:137584600-137588200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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