Variant report

Variant	rs10272604
Chromosome Location	chr7:137637017-137637018
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TFAP2A	chr7:137636968-137637467	Hela-S3	cervix:	n/a	chr7:137637151-137637166 chr7:137637151-137637163
2	RCOR1	chr7:137636993-137637415	K562	blood:	n/a	n/a
3	GATA3	chr7:137636824-137637725	MCF-7	breast:	n/a	n/a
4	GATA3	chr7:137636897-137637708	MCF-7	breast:	n/a	n/a
5	TFAP2C	chr7:137636943-137637425	Hela-S3	cervix:	n/a	chr7:137637149-137637164
6	NR2F2	chr7:137636868-137637697	MCF-7	breast:	n/a	n/a
7	NR2F2	chr7:137636867-137637701	MCF-7	breast:	n/a	n/a
8	RCOR1	chr7:137636989-137639804	IMR90	lung:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:137626054..137628754-chr7:137635805..137637429,2	MCF-7	breast:
2	chr7:137636062..137638871-chr7:137684906..137687004,3	MCF-7	breast:
3	chr7:137635412..137637600-chr7:137639096..137641353,3	MCF-7	breast:
4	chr7:137635084..137637925-chr7:137650642..137652343,2	MCF-7	breast:
5	chr7:137634525..137637267-chr7:137652549..137655097,2	MCF-7	breast:
6	chr7:137636438..137645214-chr7:137681826..137688964,19	MCF-7	breast:
7	chr7:137636617..137638453-chr7:137685083..137687010,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000237243	TF binding region
ENSG00000122787	Chromatin interaction
ENSG00000182158	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10223970	1.00[CHB][hapmap]
rs10242255	1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10260415	1.00[JPT][hapmap]
rs10260416	1.00[EUR][1000 genomes]
rs10267096	1.00[CHB][hapmap]
rs10267160	1.00[JPT][hapmap]
rs11977277	1.00[CHB][hapmap]
rs28663485	0.84[ASN][1000 genomes]
rs3735018	1.00[CHB][hapmap]
rs57385695	0.84[ASN][1000 genomes]
rs60078042	1.00[ASN][1000 genomes]
rs73456340	0.84[ASN][1000 genomes]
rs73456347	0.84[ASN][1000 genomes]
rs73456358	1.00[ASN][1000 genomes]
rs7786632	1.00[CHB][hapmap]
rs7801988	1.00[CHB][hapmap]
rs7808800	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9986783	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137618200-137637200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:137621200-137638000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:137621400-137651800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:137622000-137643000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:137622200-137638200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:137622200-137643200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:137622400-137638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:137625800-137637200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:137625800-137638200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:137626000-137646200	Weak transcription	HMEC	breast
11	chr7:137626400-137637400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:137627400-137638200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:137628200-137637800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:137628600-137637200	Weak transcription	Colonic Mucosa	Colon
15	chr7:137628800-137638600	Weak transcription	HUVEC	blood vessel
16	chr7:137629000-137638000	Weak transcription	Adipose Nuclei	Adipose
17	chr7:137629200-137638000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:137629200-137638000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:137629400-137637200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:137629400-137637200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:137629400-137637200	Weak transcription	HSMM	muscle
22	chr7:137629400-137637400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:137629400-137637400	Weak transcription	HSMMtube	muscle
24	chr7:137629400-137637600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:137629400-137637800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:137629400-137638000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:137629400-137638000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:137629400-137649600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:137630800-137638000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:137630800-137640200	Enhancers	Fetal Intestine Large	intestine
31	chr7:137631000-137638000	Weak transcription	Brain Angular Gyrus	brain
32	chr7:137631800-137639600	Enhancers	Stomach Mucosa	stomach
33	chr7:137631800-137643000	Weak transcription	Primary B cells from peripheral blood	blood
34	chr7:137632000-137640200	Enhancers	Duodenum Mucosa	Duodenum
35	chr7:137632800-137638200	Weak transcription	Right Ventricle	heart
36	chr7:137632800-137638200	Genic enhancers	K562	blood
37	chr7:137632800-137639800	Enhancers	Fetal Intestine Small	intestine
38	chr7:137633200-137638400	Enhancers	Fetal Heart	heart
39	chr7:137633200-137641400	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr7:137633400-137637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr7:137633600-137637200	Weak transcription	Spleen	Spleen
42	chr7:137634000-137638000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr7:137634000-137639600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:137634200-137638000	Weak transcription	Brain Anterior Caudate	brain
45	chr7:137634200-137638200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr7:137634600-137637600	Enhancers	Gastric	stomach
47	chr7:137634800-137640200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:137634800-137644200	Enhancers	Placenta Amnion	Placenta Amnion
49	chr7:137635000-137637800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:137635000-137639000	Enhancers	Pancreas	Pancrea

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