Variant report

Variant	rs7808800
Chromosome Location	chr7:137643722-137643723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:137637006..137638597-chr7:137642668..137644220,2	MCF-7	breast:
2	chr7:137642477..137645042-chr7:137646430..137648183,3	MCF-7	breast:
3	chr7:137642490..137644694-chr7:137661024..137662729,2	K562	blood:
4	chr7:137641418..137645622-chr7:137676350..137680595,4	MCF-7	breast:
5	chr7:137642984..137645404-chr7:137681630..137683581,2	K562	blood:
6	chr7:137632725..137635704-chr7:137642617..137645023,3	MCF-7	breast:
7	chr7:137641810..137650191-chr7:137677657..137683130,9	K562	blood:
8	chr7:137636438..137645214-chr7:137681826..137688964,19	MCF-7	breast:
9	chr7:137643171..137645975-chr7:137687593..137689334,2	K562	blood:
10	chr7:137641810..137644314-chr7:137677657..137679366,2	K562	blood:
11	chr7:137643252..137645330-chr7:137685102..137686637,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000122787	Chromatin interaction
ENSG00000182158	Chromatin interaction
ENSG00000237243	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10242255	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10260415	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10267160	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10272604	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11763953	1.00[CEU][hapmap]
rs11773019	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11978173	0.90[EUR][1000 genomes]
rs17169449	0.82[CEU][hapmap]
rs1871214	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28663485	0.84[ASN][1000 genomes]
rs57351134	1.00[EUR][1000 genomes]
rs57385695	0.84[ASN][1000 genomes]
rs57409151	1.00[EUR][1000 genomes]
rs59321723	1.00[EUR][1000 genomes]
rs60078042	1.00[ASN][1000 genomes]
rs60947467	1.00[EUR][1000 genomes]
rs61424261	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs724064	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73456340	0.84[ASN][1000 genomes]
rs73456347	0.84[ASN][1000 genomes]
rs73456358	1.00[ASN][1000 genomes]
rs73458446	1.00[EUR][1000 genomes]
rs9986783	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137621400-137651800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr7:137626000-137646200	Weak transcription	HMEC	breast
3	chr7:137629400-137649600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:137634800-137644200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr7:137635200-137663400	Weak transcription	Primary B cells from cord blood	blood
6	chr7:137635400-137644200	Weak transcription	Aorta	Aorta
7	chr7:137635600-137650800	Weak transcription	Primary T cells from cord blood	blood
8	chr7:137636000-137650800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:137636200-137650600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr7:137637000-137644400	Enhancers	NHDF-Ad	bronchial
11	chr7:137637000-137644600	Genic enhancers	HepG2	liver
12	chr7:137637400-137646800	Weak transcription	Spleen	Spleen
13	chr7:137637600-137644000	Enhancers	Rectal Smooth Muscle	rectum
14	chr7:137638200-137644000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr7:137638800-137643800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:137638800-137644800	Enhancers	Colon Smooth Muscle	Colon
17	chr7:137639000-137647200	Weak transcription	NHEK	skin
18	chr7:137639000-137654800	Weak transcription	Brain Angular Gyrus	brain
19	chr7:137639200-137643800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:137639200-137646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:137639200-137650600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:137639400-137652000	Weak transcription	Colonic Mucosa	Colon
23	chr7:137639400-137655000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:137639600-137645800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:137639600-137650800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:137639800-137644000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:137640000-137645800	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:137640000-137647600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:137640000-137654600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:137640200-137650000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr7:137640200-137651600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:137640400-137644200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:137640600-137644000	Enhancers	Adipose Nuclei	Adipose
34	chr7:137640600-137652400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:137640800-137646400	Weak transcription	Right Ventricle	heart
36	chr7:137640800-137647200	Weak transcription	Ovary	ovary
37	chr7:137641200-137644200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:137641200-137644200	Genic enhancers	Osteobl	bone
39	chr7:137641400-137643800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:137641400-137644200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr7:137641400-137647800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr7:137641600-137644200	Enhancers	NHLF	lung
43	chr7:137641800-137644200	Strong transcription	Fetal Stomach	stomach
44	chr7:137642000-137644200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:137642000-137646000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:137642200-137644200	Enhancers	Right Atrium	heart
47	chr7:137642200-137644400	Genic enhancers	K562	blood
48	chr7:137642200-137651600	Weak transcription	Fetal Heart	heart
49	chr7:137642400-137644000	Genic enhancers	Muscle Satellite Cultured Cells	--
50	chr7:137642400-137644000	Strong transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links