Variant report

Variant	rs11773019
Chromosome Location	chr7:137656221-137656222
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137650743..137652751-chr7:137656187..137658700,3	K562	blood:
2	chr7:137655309..137658058-chr7:137684090..137686096,2	MCF-7	breast:
3	chr7:137655112..137658025-chr7:137666143..137668464,2	MCF-7	breast:
4	chr7:137652817..137656770-chr7:137658404..137661649,6	K562	blood:
5	chr7:137644287..137647017-chr7:137655823..137657614,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11763953	1.00[CEU][hapmap]
rs11978173	0.90[EUR][1000 genomes]
rs1871214	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs57351134	1.00[EUR][1000 genomes]
rs57409151	1.00[EUR][1000 genomes]
rs59321723	1.00[EUR][1000 genomes]
rs60947467	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61424261	1.00[EUR][1000 genomes]
rs724064	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73458446	1.00[EUR][1000 genomes]
rs7808800	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9986783	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137635200-137663400	Weak transcription	Primary B cells from cord blood	blood
2	chr7:137646600-137657600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr7:137649800-137658000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:137650200-137660200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:137650600-137656400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:137651200-137656400	Enhancers	NH-A	brain
7	chr7:137651400-137675200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:137652000-137657600	Weak transcription	Small Intestine	intestine
9	chr7:137652200-137672200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:137652600-137659400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:137652600-137672600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:137652800-137656400	Enhancers	HUVEC	blood vessel
13	chr7:137652800-137658000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:137652800-137658200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:137652800-137658200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:137652800-137658200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:137652800-137658600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:137652800-137659400	Weak transcription	Esophagus	oesophagus
19	chr7:137652800-137660200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:137652800-137660200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:137652800-137662800	Weak transcription	Stomach Mucosa	stomach
22	chr7:137652800-137663000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:137652800-137663200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:137652800-137663200	Weak transcription	Spleen	Spleen
25	chr7:137652800-137669800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:137652800-137670000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:137652800-137674400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:137652800-137674800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:137652800-137677600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr7:137653400-137659400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr7:137653400-137661000	Weak transcription	Pancreas	Pancrea
32	chr7:137653600-137656800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:137653600-137656800	Weak transcription	Fetal Intestine Small	intestine
34	chr7:137653600-137657400	Enhancers	Colon Smooth Muscle	Colon
35	chr7:137653600-137658000	Weak transcription	Lung	lung
36	chr7:137653600-137659400	Weak transcription	Aorta	Aorta
37	chr7:137653600-137659800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr7:137653800-137656400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr7:137653800-137660400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr7:137654000-137657600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:137654000-137674200	Weak transcription	NHEK	skin
42	chr7:137654200-137658000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:137654400-137656400	Enhancers	Rectal Smooth Muscle	rectum
44	chr7:137654400-137659400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr7:137654600-137656600	Enhancers	A549	lung
46	chr7:137654600-137658000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:137655000-137657000	Enhancers	Liver	Liver
48	chr7:137655200-137656600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:137655600-137656800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:137655600-137657200	Enhancers	NHDF-Ad	bronchial

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