Variant report

Variant	rs10267160
Chromosome Location	chr7:137639026-137639027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137638900..137639657-chr7:137685767..137686633,2	MCF-7	breast:
2	chr7:137638660..137640658-chr7:137692161..137694338,3	MCF-7	breast:
3	chr7:137636438..137645214-chr7:137681826..137688964,19	MCF-7	breast:
4	chr7:137607730..137610117-chr7:137638239..137640378,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122787	Chromatin interaction
ENSG00000182158	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10224250	1.00[CEU][hapmap];0.87[GIH][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs10242255	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10260415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272604	1.00[JPT][hapmap]
rs10488443	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13228781	0.91[CEU][hapmap]
rs13245803	0.91[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs1471436	0.91[CEU][hapmap]
rs17169459	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17183616	0.91[CEU][hapmap]
rs17190292	0.91[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs17190987	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17275136	0.91[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap]
rs34100060	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs765857	0.91[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs7808800	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7812168	0.91[CEU][hapmap];0.87[GIH][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs9691292	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137621400-137651800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr7:137622000-137643000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:137622200-137643200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:137626000-137646200	Weak transcription	HMEC	breast
5	chr7:137629400-137649600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:137630800-137640200	Enhancers	Fetal Intestine Large	intestine
7	chr7:137631800-137639600	Enhancers	Stomach Mucosa	stomach
8	chr7:137631800-137643000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr7:137632000-137640200	Enhancers	Duodenum Mucosa	Duodenum
10	chr7:137632800-137639800	Enhancers	Fetal Intestine Small	intestine
11	chr7:137633200-137641400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr7:137634000-137639600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:137634800-137640200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:137634800-137644200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr7:137635000-137640400	Enhancers	Placenta	Placenta
16	chr7:137635200-137663400	Weak transcription	Primary B cells from cord blood	blood
17	chr7:137635400-137644200	Weak transcription	Aorta	Aorta
18	chr7:137635600-137643000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:137635600-137650800	Weak transcription	Primary T cells from cord blood	blood
20	chr7:137635800-137640200	Enhancers	Right Atrium	heart
21	chr7:137635800-137640200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr7:137636000-137639400	Weak transcription	Psoas Muscle	Psoas
23	chr7:137636000-137650800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:137636200-137639800	Enhancers	Hela-S3	cervix
25	chr7:137636200-137650600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr7:137636400-137639400	Enhancers	Fetal Muscle Leg	muscle
27	chr7:137636400-137640800	Enhancers	Ovary	ovary
28	chr7:137636800-137640000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:137637000-137639200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:137637000-137639400	Enhancers	Fetal Lung	lung
31	chr7:137637000-137639600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:137637000-137639600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr7:137637000-137639800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:137637000-137640000	Enhancers	Brain Hippocampus Middle	brain
35	chr7:137637000-137640000	Genic enhancers	Osteobl	bone
36	chr7:137637000-137640800	Enhancers	Fetal Stomach	stomach
37	chr7:137637000-137640800	Enhancers	Small Intestine	intestine
38	chr7:137637000-137641000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr7:137637000-137641200	Enhancers	NHLF	lung
40	chr7:137637000-137644400	Enhancers	NHDF-Ad	bronchial
41	chr7:137637000-137644600	Genic enhancers	HepG2	liver
42	chr7:137637200-137639400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:137637200-137639400	Enhancers	Colonic Mucosa	Colon
44	chr7:137637200-137639600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:137637200-137640600	Enhancers	H1 Cell Line	embryonic stem cell
46	chr7:137637400-137640200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:137637400-137640200	Enhancers	HSMMtube	muscle
48	chr7:137637400-137641400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:137637400-137642200	Weak transcription	Lung	lung
50	chr7:137637400-137642800	Weak transcription	Esophagus	oesophagus

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