Variant report

Variant	rs10272578
Chromosome Location	chr7:140003812-140003813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10239649	1.00[AMR][1000 genomes]
rs10243392	1.00[AMR][1000 genomes]
rs10243409	1.00[AMR][1000 genomes]
rs10269029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13437674	1.00[AMR][1000 genomes]
rs28571647	1.00[AMR][1000 genomes]
rs56694112	1.00[AMR][1000 genomes]
rs57950210	1.00[AMR][1000 genomes]
rs61228850	1.00[AMR][1000 genomes]
rs73472718	1.00[AMR][1000 genomes]
rs73479826	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139986800-140007800	Weak transcription	Fetal Intestine Small	intestine
2	chr7:139994600-140004000	Weak transcription	K562	blood
3	chr7:139999600-140008800	Weak transcription	Colonic Mucosa	Colon
4	chr7:139999800-140004200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr7:140000200-140004200	Enhancers	HepG2	liver
6	chr7:140003200-140006600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr7:140003200-140006800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr7:140003400-140004200	Weak transcription	Stomach Mucosa	stomach
9	chr7:140003400-140004600	Enhancers	Primary B cells from cord blood	blood
10	chr7:140003400-140010000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:140003600-140004800	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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