Variant report

Variant	rs61228850
Chromosome Location	chr7:139983870-139983871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10239649	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243392	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243409	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269029	1.00[AMR][1000 genomes]
rs10272578	1.00[AMR][1000 genomes]
rs10276766	1.00[AMR][1000 genomes]
rs13437674	1.00[AMR][1000 genomes]
rs28571647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56694112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57950210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6971110	1.00[AMR][1000 genomes]
rs73472718	1.00[AMR][1000 genomes]
rs73479826	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1015840	chr7:139912355-139987681	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv519667	chr7:139969051-139992387	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139975600-140002600	Weak transcription	Right Atrium	heart
2	chr7:139977400-139995400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:139980600-139984200	Enhancers	HepG2	liver
4	chr7:139983200-139984000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:139983200-139984000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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