Variant report

Variant	rs10272773
Chromosome Location	chr7:27469126-27469127
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10228940	1.00[AMR][1000 genomes]
rs10244367	1.00[AMR][1000 genomes]
rs10256159	1.00[AMR][1000 genomes]
rs10281591	1.00[AMR][1000 genomes]
rs28398530	1.00[AFR][1000 genomes]
rs28398552	1.00[YRI][hapmap]
rs28398554	1.00[AMR][1000 genomes]
rs28398557	1.00[YRI][hapmap]
rs28461898	1.00[AMR][1000 genomes]
rs28539571	1.00[AMR][1000 genomes]
rs6962817	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27463400-27471800	Weak transcription	Spleen	Spleen
2	chr7:27464800-27469400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr7:27465200-27472200	Weak transcription	Stomach Mucosa	stomach
4	chr7:27466200-27473800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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