Variant report

Variant	rs10256159
Chromosome Location	chr7:27616190-27616191
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:27615714..27616227-chr7:27823839..27824711,2	K562	blood:
2	chr7:27274639..27275647-chr7:27615690..27616535,7	MCF-7	breast:
3	chr7:27275235..27276066-chr7:27615695..27616444,2	MCF-7	breast:
4	chr7:27235919..27236503-chr7:27615711..27616568,3	K562	blood:
5	chr7:27235585..27236283-chr7:27615659..27616283,3	MCF-7	breast:
6	chr7:27303179..27303699-chr7:27615702..27616366,2	MCF-7	breast:
7	chr7:27249674..27250599-chr7:27615679..27616498,4	MCF-7	breast:
8	chr7:27249986..27250600-chr7:27615474..27616239,2	K562	blood:

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1014373	1.00[YRI][hapmap]
rs1015265	0.82[YRI][hapmap]
rs10228940	1.00[AMR][1000 genomes]
rs10233212	0.95[AFR][1000 genomes]
rs10272773	1.00[AMR][1000 genomes]
rs12673949	0.87[YRI][hapmap]
rs1404276	0.82[YRI][hapmap]
rs1404282	0.88[YRI][hapmap]
rs1524529	0.82[YRI][hapmap]
rs1608663	0.88[YRI][hapmap]
rs1980330	0.82[YRI][hapmap]
rs2391444	0.82[YRI][hapmap]
rs28398554	1.00[AMR][1000 genomes]
rs28461898	1.00[AMR][1000 genomes]
rs28539571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4719902	0.82[YRI][hapmap]
rs6462033	0.82[YRI][hapmap]
rs6943883	0.82[YRI][hapmap]
rs6962817	1.00[AMR][1000 genomes]
rs974883	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
2	chr7:27581400-27617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:27582400-27650800	Weak transcription	Left Ventricle	heart
4	chr7:27600600-27645600	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:27603000-27626400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:27603200-27631800	Weak transcription	Primary T cells from cord blood	blood
7	chr7:27603600-27626400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:27605200-27617200	Weak transcription	Fetal Intestine Small	intestine
9	chr7:27605200-27624400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:27605800-27645800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:27609400-27632600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:27609400-27651000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:27610000-27619000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:27610200-27617800	Weak transcription	Primary B cells from cord blood	blood
15	chr7:27614600-27617400	Weak transcription	HepG2	liver
16	chr7:27615200-27616200	Enhancers	Liver	Liver
17	chr7:27615200-27619000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:27615400-27616400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:27615600-27616200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:27615600-27621800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:27615600-27626400	Weak transcription	Ovary	ovary
22	chr7:27615600-27626400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr7:27615600-27657800	Weak transcription	Aorta	Aorta
24	chr7:27615800-27620600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:27616000-27618200	Weak transcription	Fetal Stomach	stomach
26	chr7:27616000-27620600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:27616000-27626600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:27616000-27631600	Weak transcription	Adipose Nuclei	Adipose
29	chr7:27616000-27632800	Weak transcription	HUVEC	blood vessel
30	chr7:27616000-27643400	Weak transcription	Fetal Lung	lung
31	chr7:27616000-27650800	Weak transcription	Fetal Kidney	kidney

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