Variant report

Variant	rs10233212
Chromosome Location	chr7:27604041-27604042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1015265	0.87[ASN][1000 genomes]
rs10224961	0.93[ASN][1000 genomes]
rs10231814	0.87[ASN][1000 genomes]
rs10240622	0.93[ASN][1000 genomes]
rs10242812	0.93[ASN][1000 genomes]
rs10256159	0.95[AFR][1000 genomes]
rs10499580	0.93[ASN][1000 genomes]
rs12673949	0.87[ASN][1000 genomes]
rs1404282	0.87[ASN][1000 genomes]
rs1524529	0.87[ASN][1000 genomes]
rs1608663	0.87[ASN][1000 genomes]
rs17136532	0.93[ASN][1000 genomes]
rs17155388	0.93[ASN][1000 genomes]
rs1980330	0.87[ASN][1000 genomes]
rs2041715	0.87[ASN][1000 genomes]
rs2391440	0.87[ASN][1000 genomes]
rs2391444	0.87[ASN][1000 genomes]
rs2391445	0.82[ASN][1000 genomes]
rs28539571	0.95[AFR][1000 genomes]
rs6462033	0.87[ASN][1000 genomes]
rs6952874	0.93[ASN][1000 genomes]
rs6980308	0.93[ASN][1000 genomes]
rs73069895	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73073128	0.81[EUR][1000 genomes]
rs759270	0.82[ASN][1000 genomes]
rs759271	0.82[ASN][1000 genomes]
rs7786973	0.87[ASN][1000 genomes]
rs9639559	0.87[ASN][1000 genomes]
rs974883	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
2	chr7:27580600-27615000	Weak transcription	Aorta	Aorta
3	chr7:27581400-27617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:27582400-27650800	Weak transcription	Left Ventricle	heart
5	chr7:27582800-27604800	Weak transcription	Fetal Kidney	kidney
6	chr7:27582800-27615000	Weak transcription	Placenta	Placenta
7	chr7:27582800-27615200	Weak transcription	Ovary	ovary
8	chr7:27600600-27645600	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:27601200-27609600	Weak transcription	Osteobl	bone
10	chr7:27602400-27604600	Weak transcription	Fetal Intestine Small	intestine
11	chr7:27602800-27604800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:27603000-27626400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:27603200-27604800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:27603200-27615400	Weak transcription	Adipose Nuclei	Adipose
15	chr7:27603200-27631800	Weak transcription	Primary T cells from cord blood	blood
16	chr7:27603400-27604600	Weak transcription	Fetal Lung	lung
17	chr7:27603400-27604800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:27603400-27606600	Weak transcription	HSMM	muscle
19	chr7:27603400-27608600	Weak transcription	NHDF-Ad	bronchial
20	chr7:27603400-27609000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:27603600-27626400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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