Variant report

Variant	rs10231814
Chromosome Location	chr7:27548852-27548853
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1015265	0.88[ASN][1000 genomes]
rs10224961	0.94[ASN][1000 genomes]
rs10227609	0.97[EUR][1000 genomes]
rs10227833	0.94[EUR][1000 genomes]
rs10233212	0.87[ASN][1000 genomes]
rs10240622	0.94[ASN][1000 genomes]
rs10242812	0.94[ASN][1000 genomes]
rs10499580	0.94[ASN][1000 genomes]
rs1229604	0.94[EUR][1000 genomes]
rs12673949	0.88[ASN][1000 genomes]
rs1404282	0.88[ASN][1000 genomes]
rs1524529	0.88[ASN][1000 genomes]
rs1608663	0.88[ASN][1000 genomes]
rs17136532	0.94[ASN][1000 genomes]
rs17155388	0.94[ASN][1000 genomes]
rs1980330	0.88[ASN][1000 genomes]
rs2041715	0.88[ASN][1000 genomes]
rs2110524	0.81[EUR][1000 genomes]
rs2391439	0.94[EUR][1000 genomes]
rs2391444	0.88[ASN][1000 genomes]
rs2391445	0.82[ASN][1000 genomes]
rs55958976	0.94[EUR][1000 genomes]
rs6462033	0.88[ASN][1000 genomes]
rs6952874	0.94[ASN][1000 genomes]
rs6980308	0.94[ASN][1000 genomes]
rs759270	0.82[ASN][1000 genomes]
rs759271	0.82[ASN][1000 genomes]
rs7786973	0.88[ASN][1000 genomes]
rs9639559	0.88[ASN][1000 genomes]
rs974883	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10231814	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27539400-27558000	Weak transcription	Fetal Stomach	stomach
2	chr7:27548600-27549400	ZNF genes & repeats	Aorta	Aorta
3	chr7:27548800-27549000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:27548800-27549400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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