Variant report

Variant	rs17155388
Chromosome Location	chr7:27540805-27540806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1015265	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10224961	1.00[ASN][1000 genomes]
rs10231814	0.94[ASN][1000 genomes]
rs10233212	0.93[ASN][1000 genomes]
rs10240622	1.00[ASN][1000 genomes]
rs10242812	1.00[ASN][1000 genomes]
rs1030003	1.00[CHB][hapmap]
rs10499580	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12673949	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1404282	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1524529	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1608663	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17136532	1.00[ASN][1000 genomes]
rs1980330	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2041715	0.81[ASN][1000 genomes]
rs2391440	0.81[ASN][1000 genomes]
rs2391444	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6462033	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6946305	1.00[CHB][hapmap]
rs6952874	1.00[ASN][1000 genomes]
rs6974387	1.00[CHB][hapmap]
rs6980308	1.00[ASN][1000 genomes]
rs7786973	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9639559	0.81[ASN][1000 genomes]
rs974883	1.00[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27532400-27541000	Weak transcription	Pancreas	Pancrea
2	chr7:27539400-27558000	Weak transcription	Fetal Stomach	stomach
3	chr7:27540600-27541000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:27540600-27541000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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