Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1015265	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10224961	1.00[ASN][1000 genomes]
rs10231814	0.94[ASN][1000 genomes]
rs10233212	0.93[ASN][1000 genomes]
rs10240622	1.00[ASN][1000 genomes]
rs10242812	1.00[ASN][1000 genomes]
rs1030003	1.00[CHB][hapmap]
rs12673949	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1404282	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1524529	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1608663	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17136532	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17155388	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1980330	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2041715	0.81[ASN][1000 genomes]
rs2391440	0.81[ASN][1000 genomes]
rs2391444	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6462033	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6946305	1.00[CHB][hapmap]
rs6952874	1.00[ASN][1000 genomes]
rs6974387	1.00[CHB][hapmap]
rs6980308	1.00[ASN][1000 genomes]
rs7786973	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9639559	0.81[ASN][1000 genomes]
rs974883	1.00[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27539400-27558000	Weak transcription	Fetal Stomach	stomach
2	chr7:27549200-27561200	Weak transcription	Liver	Liver
3	chr7:27549400-27550000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:27549400-27550800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:27549400-27554000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:27549400-27554000	Weak transcription	Aorta	Aorta
7	chr7:27549600-27550200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:27549800-27550400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:27549800-27550600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:27549800-27550600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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