Variant report

Variant	rs10275041
Chromosome Location	chr7:48191871-48191872
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47947869..47949465-chr7:48190309..48191924,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10229354	0.80[AMR][1000 genomes]
rs10238679	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10248319	0.80[AMR][1000 genomes]
rs10252745	0.80[AMR][1000 genomes]
rs10255965	0.80[AMR][1000 genomes]
rs10264375	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11761233	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11769253	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12702432	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12718304	0.82[AMR][1000 genomes]
rs12718306	0.82[AMR][1000 genomes]
rs13228112	0.82[AMR][1000 genomes]
rs13228130	0.82[AMR][1000 genomes]
rs13229079	0.82[AMR][1000 genomes]
rs13239697	0.80[AMR][1000 genomes]
rs13243393	0.82[AMR][1000 genomes]
rs13437873	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28588066	0.82[AMR][1000 genomes]
rs34083053	0.82[AMR][1000 genomes]
rs34427915	0.80[AMR][1000 genomes]
rs34487066	0.80[AMR][1000 genomes]
rs34705201	0.80[AMR][1000 genomes]
rs34782923	0.80[AMR][1000 genomes]
rs34938570	0.82[AMR][1000 genomes]
rs34940245	0.82[AMR][1000 genomes]
rs34950764	0.82[AMR][1000 genomes]
rs34978094	0.80[AMR][1000 genomes]
rs35274735	0.80[AMR][1000 genomes]
rs35519500	0.80[AMR][1000 genomes]
rs35586320	0.82[AMR][1000 genomes]
rs35736166	0.80[AMR][1000 genomes]
rs4409351	0.80[AMR][1000 genomes]
rs67466763	0.82[AMR][1000 genomes]
rs68088838	0.80[AMR][1000 genomes]
rs6948004	0.83[AMR][1000 genomes]
rs6960463	0.80[AMR][1000 genomes]
rs73339660	0.82[AMR][1000 genomes]
rs7455218	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7457028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7458095	0.94[EUR][1000 genomes]
rs7776850	0.80[AMR][1000 genomes]
rs7791246	0.80[AMR][1000 genomes]
rs7806597	0.80[AMR][1000 genomes]
rs7812246	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv532120	chr7:47882757-48195869	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv470221	chr7:47917495-48354363	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv464442	chr7:47917495-48354820	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv606893	chr7:47917495-48354820	Flanking Active TSS Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1027414	chr7:48117684-48438543	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1033738	chr7:48143988-48349357	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48187000-48193200	Weak transcription	HepG2	liver
2	chr7:48190800-48194200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:48191200-48194200	Weak transcription	Stomach Mucosa	stomach

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