Variant report

Variant	rs1027566
Chromosome Location	chr3:111643383-111643384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111636515..111638251-chr3:111642842..111645026,2	MCF-7	breast:
2	chr3:111633731..111635753-chr3:111641822..111644588,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10934126	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1282946	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1282963	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1282964	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1282965	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858948	0.87[EUR][1000 genomes]
rs2399399	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2895387	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34186517	0.89[EUR][1000 genomes]
rs4234406	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4682065	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6779756	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs712508	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630129	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs811814	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937551	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs951660	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9834695	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9839401	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9867058	0.85[CEU][hapmap];1.00[CHB][hapmap]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
3	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
5	chr3:111632000-111643400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr3:111634400-111644800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:111637200-111646400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:111637400-111647000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:111638600-111659200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:111639800-111661000	Weak transcription	Primary B cells from cord blood	blood
17	chr3:111640000-111648400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:111640000-111651800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:111640200-111643400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:111640200-111651200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:111640400-111645000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:111640800-111645000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:111641000-111643400	Genic enhancers	Placenta Amnion	Placenta Amnion
24	chr3:111641000-111643400	Strong transcription	HepG2	liver
25	chr3:111641000-111643600	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:111641000-111645400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:111641000-111645400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:111641000-111645400	Strong transcription	Fetal Intestine Large	intestine
29	chr3:111641000-111645400	Genic enhancers	NHEK	skin
30	chr3:111641200-111643400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:111641200-111643600	Genic enhancers	HMEC	breast
32	chr3:111641200-111645400	Strong transcription	Fetal Stomach	stomach
33	chr3:111641200-111646000	Genic enhancers	A549	lung
34	chr3:111641200-111646200	Genic enhancers	Hela-S3	cervix
35	chr3:111641800-111643400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr3:111641800-111643400	Genic enhancers	HSMM	muscle
37	chr3:111641800-111643600	Genic enhancers	Muscle Satellite Cultured Cells	--
38	chr3:111641800-111644000	Weak transcription	Fetal Kidney	kidney
39	chr3:111641800-111650600	Weak transcription	Aorta	Aorta
40	chr3:111641800-111658200	Weak transcription	Ovary	ovary
41	chr3:111642000-111643400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:111642000-111643600	Genic enhancers	Fetal Heart	heart
43	chr3:111642000-111643600	Enhancers	Right Atrium	heart
44	chr3:111642000-111645400	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr3:111642200-111643400	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr3:111642200-111643800	Enhancers	HSMMtube	muscle
47	chr3:111642200-111674400	Weak transcription	Lung	lung
48	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
49	chr3:111642400-111643400	Genic enhancers	Stomach Smooth Muscle	stomach
50	chr3:111642400-111643600	Enhancers	Skeletal Muscle Male	skeletal muscle

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