Variant report

Variant	rs4682065
Chromosome Location	chr3:111642125-111642126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111633731..111635753-chr3:111641822..111644588,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1027566	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10934126	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11713044	1.00[JPT][hapmap]
rs11916823	0.86[ASN][1000 genomes]
rs1282945	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1282946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1282963	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1282964	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1282965	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13061421	1.00[JPT][hapmap]
rs1388629	0.89[CEU][hapmap]
rs16858936	1.00[JPT][hapmap]
rs16858948	0.88[EUR][1000 genomes]
rs2399399	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2895387	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34186517	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4234406	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493456	1.00[JPT][hapmap]
rs6779756	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796683	1.00[JPT][hapmap]
rs6804475	1.00[JPT][hapmap]
rs712508	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs712514	1.00[JPT][hapmap]
rs712518	1.00[JPT][hapmap]
rs7630129	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766745	1.00[JPT][hapmap]
rs811814	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs937551	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951660	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9816238	1.00[JPT][hapmap]
rs9834695	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9839401	0.93[EUR][1000 genomes]
rs9867058	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
2	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
5	chr3:111630600-111642400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:111630600-111642800	Weak transcription	Pancreas	Pancrea
7	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
11	chr3:111632000-111642600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:111632000-111643400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:111634400-111644800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr3:111635800-111642800	Strong transcription	Adipose Nuclei	Adipose
19	chr3:111635800-111643200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:111636400-111643200	Weak transcription	Psoas Muscle	Psoas
21	chr3:111636600-111642200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:111636800-111642600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:111637200-111646400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:111637400-111647000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:111637800-111642800	Weak transcription	Fetal Thymus	thymus
27	chr3:111638000-111642800	Weak transcription	Gastric	stomach
28	chr3:111638600-111659200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr3:111638800-111643200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:111638800-111643200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr3:111639400-111642600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr3:111639400-111643200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr3:111639600-111642200	Weak transcription	HSMMtube	muscle
35	chr3:111639800-111661000	Weak transcription	Primary B cells from cord blood	blood
36	chr3:111640000-111642200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:111640000-111648400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr3:111640000-111651800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr3:111640200-111643000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:111640200-111643400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr3:111640200-111651200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:111640400-111645000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr3:111640800-111642400	Strong transcription	Stomach Smooth Muscle	stomach
44	chr3:111640800-111645000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:111641000-111642200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:111641000-111642600	Genic enhancers	HUVEC	blood vessel
47	chr3:111641000-111643000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:111641000-111643000	Genic enhancers	Right Ventricle	heart
49	chr3:111641000-111643200	Genic enhancers	Fetal Muscle Leg	muscle
50	chr3:111641000-111643400	Genic enhancers	Placenta Amnion	Placenta Amnion

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