Variant report

Variant	rs13061421
Chromosome Location	chr3:111677986-111677987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111677757-111678249	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr3:111677793-111678938	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111673398..111675283-chr3:111676915..111679475,3	MCF-7	breast:

Variant related genes	Relation type
PHLDB2	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11713044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1282939	0.87[EUR][1000 genomes]
rs1282945	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs1282946	1.00[JPT][hapmap]
rs16858936	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4682066	0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs493456	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs579082	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6438024	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6796683	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs712514	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs712518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs712519	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs774744	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9816238	0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9834695	1.00[JPT][hapmap]
rs9867058	0.86[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
3	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:111652400-111685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:111653000-111686200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
7	chr3:111656600-111679200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:111657200-111682000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:111658600-111697400	Weak transcription	Gastric	stomach
10	chr3:111658800-111685800	Weak transcription	HepG2	liver
11	chr3:111661600-111689800	Weak transcription	Ovary	ovary
12	chr3:111663000-111681400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:111663800-111681200	Strong transcription	NHEK	skin
14	chr3:111666600-111697400	Weak transcription	Esophagus	oesophagus
15	chr3:111670800-111685000	Strong transcription	Liver	Liver
16	chr3:111671000-111681800	Strong transcription	NH-A	brain
17	chr3:111671200-111680800	Weak transcription	A549	lung
18	chr3:111672800-111686000	Weak transcription	Fetal Intestine Small	intestine
19	chr3:111673000-111680000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:111673000-111680600	Weak transcription	Fetal Intestine Large	intestine
21	chr3:111673000-111681800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr3:111673000-111682000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:111673000-111688400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:111673000-111688400	Weak transcription	Fetal Stomach	stomach
25	chr3:111673000-111697400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:111673000-111697400	Weak transcription	Pancreas	Pancrea
27	chr3:111673400-111679400	Weak transcription	Fetal Heart	heart
28	chr3:111673400-111681200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:111673400-111681800	Strong transcription	Osteobl	bone
30	chr3:111673600-111686000	Weak transcription	Fetal Kidney	kidney
31	chr3:111673800-111680400	Weak transcription	Hela-S3	cervix
32	chr3:111673800-111680800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:111673800-111682000	Weak transcription	NHLF	lung
34	chr3:111675000-111680600	Weak transcription	Fetal Muscle Leg	muscle
35	chr3:111675000-111682600	Weak transcription	Colon Smooth Muscle	Colon
36	chr3:111675000-111697400	Weak transcription	Lung	lung
37	chr3:111675200-111678000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr3:111675200-111678000	Enhancers	HUVEC	blood vessel
39	chr3:111675200-111678200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:111675400-111678000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr3:111675400-111678000	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr3:111675600-111680200	Weak transcription	NHDF-Ad	bronchial
43	chr3:111675800-111678000	Enhancers	H9 Cell Line	embryonic stem cell
44	chr3:111675800-111685200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:111676000-111678200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:111676000-111679200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:111676200-111680200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:111676400-111678400	Weak transcription	Adipose Nuclei	Adipose
49	chr3:111676400-111681800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:111676600-111678000	Weak transcription	HSMMtube	muscle

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