Variant report

Variant	rs1282939
Chromosome Location	chr3:111622982-111622983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11713044	0.87[EUR][1000 genomes]
rs1282945	0.93[EUR][1000 genomes]
rs13061421	0.87[EUR][1000 genomes]
rs493456	0.89[EUR][1000 genomes]
rs579082	0.89[EUR][1000 genomes]
rs6438024	0.87[EUR][1000 genomes]
rs6796683	0.88[EUR][1000 genomes]
rs6804475	0.88[EUR][1000 genomes]
rs712514	0.88[EUR][1000 genomes]
rs712518	0.88[EUR][1000 genomes]
rs712519	0.87[EUR][1000 genomes]
rs766745	0.88[EUR][1000 genomes]
rs774744	0.89[EUR][1000 genomes]

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
2	chr3:111604000-111632200	Weak transcription	Gastric	stomach
3	chr3:111604400-111625600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:111604400-111629400	Weak transcription	Ovary	ovary
5	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:111609600-111623200	Weak transcription	Fetal Heart	heart
9	chr3:111609800-111623200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:111610000-111623200	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
12	chr3:111617600-111631800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:111617800-111623200	Weak transcription	Liver	Liver
14	chr3:111617800-111623400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:111618200-111628800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:111618400-111623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:111618800-111626400	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:111619000-111623600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:111619800-111624000	Enhancers	HUVEC	blood vessel
20	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
21	chr3:111620400-111624000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:111620600-111624200	Enhancers	NHDF-Ad	bronchial
23	chr3:111620600-111624400	Enhancers	HMEC	breast
24	chr3:111620600-111626800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:111620800-111623600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr3:111620800-111624400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:111621000-111624000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:111621000-111624200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:111621200-111623200	Weak transcription	Fetal Lung	lung
30	chr3:111621200-111626400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:111621600-111623400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:111621600-111623600	Enhancers	HSMM	muscle
33	chr3:111621600-111624000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:111621600-111624000	Enhancers	NHLF	lung
35	chr3:111621600-111624200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr3:111621800-111624000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:111621800-111632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr3:111622000-111623200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:111622000-111623800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:111622000-111623800	Enhancers	Adipose Nuclei	Adipose
41	chr3:111622000-111624200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr3:111622000-111625600	Strong transcription	Fetal Stomach	stomach
43	chr3:111622200-111623400	Enhancers	Lung	lung
44	chr3:111622200-111623400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:111622400-111623000	Enhancers	Stomach Smooth Muscle	stomach
46	chr3:111622400-111623200	Weak transcription	Left Ventricle	heart
47	chr3:111622400-111623200	Weak transcription	Psoas Muscle	Psoas
48	chr3:111622400-111623200	Enhancers	NHEK	skin
49	chr3:111622400-111624200	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr3:111622400-111630400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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