Variant report
| Variant | rs10277151 |
|---|---|
| Chromosome Location | chr7:16115413-16115414 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:16113784..16116426-chr7:16125295..16127374,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10227232 | 0.88[MEX][hapmap];0.95[TSI][hapmap] |
| rs10252227 | 0.81[EUR][1000 genomes] |
| rs10950600 | 0.91[EUR][1000 genomes] |
| rs10950601 | 0.81[EUR][1000 genomes] |
| rs11766276 | 0.90[EUR][1000 genomes] |
| rs12537888 | 0.80[EUR][1000 genomes] |
| rs13221870 | 0.81[EUR][1000 genomes] |
| rs1527215 | 0.80[EUR][1000 genomes] |
| rs1881242 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1990364 | 0.80[EUR][1000 genomes] |
| rs6943936 | 0.80[EUR][1000 genomes] |
| rs6959719 | 0.91[EUR][1000 genomes] |
| rs6968537 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016642 | chr7:15884061-16799788 | Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv949309 | chr7:15986709-16236162 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv949555 | chr7:16078412-16279290 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10277151 | DGKB | cis | parietal | SCAN |
| rs10277151 | HDAC9 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:16113600-16117400 | Weak transcription | Fetal Lung | lung |
