Variant report

Variant	rs11766276
Chromosome Location	chr7:16100588-16100589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10277151	0.90[EUR][1000 genomes]
rs10950600	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10950601	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11762563	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12533693	0.83[ASN][1000 genomes]
rs12537658	0.81[EUR][1000 genomes]
rs12539945	0.81[EUR][1000 genomes]
rs12667418	0.81[EUR][1000 genomes]
rs13221870	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13231996	0.83[EUR][1000 genomes]
rs1405591	0.83[ASN][1000 genomes]
rs17284967	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1881242	0.88[EUR][1000 genomes]
rs66933521	0.81[ASN][1000 genomes]
rs6959719	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16091800-16103000	Weak transcription	Right Atrium	heart
2	chr7:16092200-16100600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:16096000-16106600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:16099200-16106600	Enhancers	Fetal Lung	lung
5	chr7:16099600-16103600	Weak transcription	Left Ventricle	heart
6	chr7:16100000-16101600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:16100000-16101800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:16100000-16101800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:16100000-16101800	Enhancers	HUVEC	blood vessel
10	chr7:16100000-16102000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:16100000-16104200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:16100200-16100600	Bivalent Enhancer	NH-A	brain
13	chr7:16100200-16102200	Enhancers	NHDF-Ad	bronchial
14	chr7:16100200-16103600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:16100200-16103800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:16100400-16101000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:16100400-16103000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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