Variant report

Variant	rs17284967
Chromosome Location	chr7:16110644-16110645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:15760649..15761697-chr7:16110615..16111343,3	MCF-7	breast:
2	chr7:15365434..15366404-chr7:16110606..16111525,6	MCF-7	breast:
3	chr7:16110607..16111591-chr7:16604555..16605101,2	K562	blood:
4	chr7:15238978..15239740-chr7:16110589..16111290,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10487911	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10950600	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10950601	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10950604	0.80[EUR][1000 genomes]
rs11760631	0.81[AMR][1000 genomes]
rs11760717	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11762563	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11766276	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11773533	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12533693	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12537658	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12539174	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12539945	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12667418	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12699766	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12699767	0.83[AFR][1000 genomes]
rs12699769	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13221870	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231996	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1405591	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1527203	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1527205	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17169263	0.89[CHB][hapmap]
rs2240855	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28444529	0.83[EUR][1000 genomes]
rs34612021	0.80[EUR][1000 genomes]
rs66933521	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6959719	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs758702	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7777809	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7785638	0.85[ASN][1000 genomes]
rs7801576	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16102000-16113200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:16103600-16114800	Weak transcription	Fetal Heart	heart
3	chr7:16107000-16111000	Weak transcription	Stomach Mucosa	stomach
4	chr7:16107800-16110800	Weak transcription	HUVEC	blood vessel
5	chr7:16108200-16110800	Weak transcription	Adipose Nuclei	Adipose
6	chr7:16110600-16110800	Enhancers	Fetal Lung	lung
7	chr7:16110600-16111000	Flanking Active TSS	Liver	Liver

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