Variant report

Variant	rs1527205
Chromosome Location	chr7:16160617-16160618
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16160260..16161964-chr7:16601044..16602872,2	K562	blood:
2	chr7:16150627..16153575-chr7:16159253..16161215,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10227232	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10487911	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10950601	0.81[EUR][1000 genomes]
rs10950604	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11760631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760717	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11762563	0.81[AMR][1000 genomes]
rs11773181	0.84[CHB][hapmap]
rs11773533	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12533693	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12537658	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12537888	0.82[EUR][1000 genomes]
rs12539174	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12539945	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12667418	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12668400	0.83[JPT][hapmap]
rs12699769	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13221870	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13231996	0.81[EUR][1000 genomes]
rs13245773	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1405591	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1527203	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1527215	0.82[EUR][1000 genomes]
rs17284967	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1990364	0.82[EUR][1000 genomes]
rs2008133	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2240855	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28444529	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34612021	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4721475	0.80[EUR][1000 genomes]
rs66933521	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6943936	0.82[EUR][1000 genomes]
rs6968537	0.82[EUR][1000 genomes]
rs73071843	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs758702	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7777809	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7785638	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7801576	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1847175	chr7:16155335-16272661	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16156800-16164200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:16157200-16160800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:16158200-16170400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:16160000-16163200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links