Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10227232	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs10487911	0.80[EUR][1000 genomes]
rs10950600	0.82[EUR][1000 genomes]
rs10950601	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11760631	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11760717	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11762563	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11766276	0.81[EUR][1000 genomes]
rs11773533	0.83[EUR][1000 genomes]
rs12533693	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12539174	0.82[EUR][1000 genomes]
rs12539945	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12667418	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12699766	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12699769	0.80[EUR][1000 genomes]
rs13221870	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13231996	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1405591	0.81[EUR][1000 genomes]
rs1527203	0.80[EUR][1000 genomes]
rs1527205	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17284967	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2240855	0.80[EUR][1000 genomes]
rs28444529	0.82[EUR][1000 genomes]
rs66933521	0.81[EUR][1000 genomes]
rs6945862	0.94[CHB][hapmap]
rs6959719	0.82[EUR][1000 genomes]
rs7777809	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12537658	TMEM106B	cis	cerebellum	SCAN
rs12537658	HDAC9	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16117200-16126400	Weak transcription	Aorta	Aorta
2	chr7:16118200-16119600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:16118200-16120800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:16118200-16129400	Weak transcription	Fetal Muscle Leg	muscle
5	chr7:16118400-16123000	Weak transcription	HUVEC	blood vessel
6	chr7:16118800-16119800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:16119400-16119800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:16119400-16120000	Enhancers	HMEC	breast

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