Variant report

Variant	rs6945862
Chromosome Location	chr7:16124226-16124227
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10950602	0.80[ASN][1000 genomes]
rs11769952	0.88[ASN][1000 genomes]
rs11773181	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1528135	0.94[ASN][1000 genomes]
rs1528151	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1881241	0.88[ASN][1000 genomes]
rs6945278	0.92[ASN][1000 genomes]
rs6946639	0.94[ASN][1000 genomes]
rs6965576	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16117200-16126400	Weak transcription	Aorta	Aorta
2	chr7:16118200-16129400	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:16121800-16126400	Weak transcription	Gastric	stomach
4	chr7:16122200-16133000	Weak transcription	Psoas Muscle	Psoas
5	chr7:16122400-16135400	Weak transcription	Left Ventricle	heart
6	chr7:16123000-16125200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:16123000-16125200	Enhancers	HMEC	breast
8	chr7:16123400-16124400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:16123400-16124400	Enhancers	Fetal Lung	lung
10	chr7:16123400-16124600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:16123400-16124600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:16123400-16125000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:16123400-16125000	Enhancers	Brain Germinal Matrix	brain
14	chr7:16123400-16125000	Enhancers	NHEK	skin
15	chr7:16123600-16124400	Enhancers	Fetal Heart	heart
16	chr7:16123800-16124400	Flanking Active TSS	HUVEC	blood vessel
17	chr7:16123800-16124400	Enhancers	Osteobl	bone
18	chr7:16124000-16124400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr7:16124000-16124400	Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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