Variant report

Variant	rs1881241
Chromosome Location	chr7:16100729-16100730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1034958	0.80[EUR][1000 genomes]
rs10950599	0.80[EUR][1000 genomes]
rs11769952	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773181	0.89[MEX][hapmap]
rs13225542	0.80[EUR][1000 genomes]
rs1528135	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6461221	0.81[EUR][1000 genomes]
rs6945278	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6945862	0.88[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs6946639	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6965576	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs875127	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16091800-16103000	Weak transcription	Right Atrium	heart
2	chr7:16096000-16106600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:16099200-16106600	Enhancers	Fetal Lung	lung
4	chr7:16099600-16103600	Weak transcription	Left Ventricle	heart
5	chr7:16100000-16101600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:16100000-16101800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:16100000-16101800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:16100000-16101800	Enhancers	HUVEC	blood vessel
9	chr7:16100000-16102000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:16100000-16104200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:16100200-16102200	Enhancers	NHDF-Ad	bronchial
12	chr7:16100200-16103600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:16100200-16103800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:16100400-16101000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:16100400-16103000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:16100600-16101000	Enhancers	NHLF	lung
17	chr7:16100600-16101400	Weak transcription	Osteobl	bone
18	chr7:16100600-16101600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:16100600-16101600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:16100600-16102400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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