Variant report

Variant	rs6461221
Chromosome Location	chr7:16108697-16108698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1034958	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10950599	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11769952	0.81[EUR][1000 genomes]
rs13225542	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1527202	0.82[AMR][1000 genomes]
rs1528137	0.88[AMR][1000 genomes]
rs1528148	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1881241	0.81[EUR][1000 genomes]
rs1918859	0.90[AMR][1000 genomes]
rs2056419	0.85[AMR][1000 genomes]
rs2056420	0.85[AMR][1000 genomes]
rs4721472	0.82[AMR][1000 genomes]
rs6945278	0.84[EUR][1000 genomes]
rs6945873	0.85[AMR][1000 genomes]
rs6965576	0.83[EUR][1000 genomes]
rs7798339	0.88[AMR][1000 genomes]
rs875127	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs969610	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16102000-16113200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:16103600-16114800	Weak transcription	Fetal Heart	heart
3	chr7:16107000-16111000	Weak transcription	Stomach Mucosa	stomach
4	chr7:16107800-16109600	Weak transcription	Right Atrium	heart
5	chr7:16107800-16110600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:16107800-16110800	Weak transcription	HUVEC	blood vessel
7	chr7:16108000-16109600	Weak transcription	Liver	Liver
8	chr7:16108200-16109400	Weak transcription	Fetal Lung	lung
9	chr7:16108200-16110800	Weak transcription	Adipose Nuclei	Adipose
10	chr7:16108400-16109600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:16108600-16109800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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