Variant report

Variant	rs1527202
Chromosome Location	chr7:16157447-16157448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16155027..16159755-chr7:16165295..16168369,4	K562	blood:
2	chr7:16155299..16158240-chr7:16469053..16471948,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1012401	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1012402	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1034959	0.86[CEU][hapmap]
rs11975989	0.87[CEU][hapmap]
rs1295135	0.87[CEU][hapmap]
rs1295136	0.87[CEU][hapmap]
rs1295138	0.87[CEU][hapmap]
rs1295139	0.86[CEU][hapmap]
rs1295142	0.87[CEU][hapmap]
rs1295143	0.87[CEU][hapmap]
rs1295161	0.80[EUR][1000 genomes]
rs1295162	0.80[EUR][1000 genomes]
rs1295163	0.80[EUR][1000 genomes]
rs13230369	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1527196	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1527204	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1528137	0.92[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1918859	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1918860	0.84[AFR][1000 genomes]
rs2056419	0.93[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2056420	0.93[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28837728	0.80[EUR][1000 genomes]
rs4721472	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56064186	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6461221	0.82[AMR][1000 genomes]
rs6461225	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6945873	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7780782	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7781532	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7798339	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs875127	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1847175	chr7:16155335-16272661	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16155600-16158600	Weak transcription	Fetal Stomach	stomach
2	chr7:16155800-16158600	Weak transcription	Ovary	ovary
3	chr7:16156200-16160200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:16156800-16157800	Weak transcription	Pancreas	Pancrea
5	chr7:16156800-16164200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:16157200-16160800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links