Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1012401	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1012402	0.89[EUR][1000 genomes]
rs10950599	0.85[AMR][1000 genomes]
rs1295161	0.80[EUR][1000 genomes]
rs1295162	0.80[EUR][1000 genomes]
rs1295163	0.80[EUR][1000 genomes]
rs13230369	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1527196	0.97[EUR][1000 genomes]
rs1527202	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1527204	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1528137	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1528148	0.84[AMR][1000 genomes]
rs1918859	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1918860	0.83[AFR][1000 genomes]
rs2056419	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2056420	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4721472	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56064186	0.84[EUR][1000 genomes]
rs6461221	0.88[AMR][1000 genomes]
rs6461225	0.91[EUR][1000 genomes]
rs6945873	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7780782	0.83[EUR][1000 genomes]
rs7781532	0.93[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs969610	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16135800-16145200	Weak transcription	Left Ventricle	heart
2	chr7:16139800-16143600	Weak transcription	Fetal Lung	lung

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