Variant report

Variant	rs56064186
Chromosome Location	chr7:16134600-16134601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1034958	0.80[ASN][1000 genomes]
rs13225542	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1527196	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1527202	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1527204	0.81[ASN][1000 genomes]
rs1528137	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918859	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2056419	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2056420	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4721472	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6461225	0.81[EUR][1000 genomes]
rs6945873	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781532	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7798339	0.84[EUR][1000 genomes]
rs875127	0.83[ASN][1000 genomes]
rs969610	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16122400-16135400	Weak transcription	Left Ventricle	heart
2	chr7:16131600-16135400	Weak transcription	Fetal Stomach	stomach
3	chr7:16131800-16138000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:16132000-16135400	Weak transcription	Right Atrium	heart
5	chr7:16132000-16137400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:16132400-16137000	Weak transcription	HUVEC	blood vessel
7	chr7:16134200-16135800	Enhancers	Fetal Lung	lung
8	chr7:16134400-16135200	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:16134600-16135800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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