Variant report

Variant	rs1527204
Chromosome Location	chr7:16190428-16190429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1012401	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1012402	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10252017	0.88[EUR][1000 genomes]
rs11975989	0.83[EUR][1000 genomes]
rs1295131	0.85[EUR][1000 genomes]
rs1295133	0.85[EUR][1000 genomes]
rs1295134	0.85[EUR][1000 genomes]
rs1295135	0.86[EUR][1000 genomes]
rs1295136	0.85[EUR][1000 genomes]
rs1295138	0.85[EUR][1000 genomes]
rs1295139	0.85[EUR][1000 genomes]
rs1295142	0.85[EUR][1000 genomes]
rs1295143	0.85[EUR][1000 genomes]
rs1295149	0.85[EUR][1000 genomes]
rs1295150	0.85[EUR][1000 genomes]
rs1295152	0.85[EUR][1000 genomes]
rs1295161	0.89[EUR][1000 genomes]
rs1295162	0.89[EUR][1000 genomes]
rs1295163	0.89[EUR][1000 genomes]
rs13230369	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1527196	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1527202	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1528137	0.83[AMR][1000 genomes]
rs17150163	0.85[EUR][1000 genomes]
rs1918859	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2056419	0.85[AMR][1000 genomes]
rs2056420	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28837728	0.86[EUR][1000 genomes]
rs4721472	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56064186	0.81[ASN][1000 genomes]
rs6461225	0.83[EUR][1000 genomes]
rs6945873	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7781532	0.88[EUR][1000 genomes]
rs7798339	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1847175	chr7:16155335-16272661	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1844385	chr7:16168502-16211553	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv971167	chr7:16174475-16196736	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16190000-16191000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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