Variant report

Variant	rs1012401
Chromosome Location	chr7:16211553-16211554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16211386..16214233-chr7:16216618..16219049,2	MCF-7	breast:
2	chr7:16192281..16194569-chr7:16210731..16212589,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1012402	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10252017	0.89[EUR][1000 genomes]
rs1034959	0.85[CEU][hapmap]
rs11975989	1.00[CEU][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs1295131	0.86[EUR][1000 genomes]
rs1295133	0.86[EUR][1000 genomes]
rs1295134	0.86[EUR][1000 genomes]
rs1295135	1.00[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs1295136	1.00[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1295138	1.00[CEU][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1295139	1.00[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1295142	1.00[CEU][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1295143	1.00[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1295149	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1295150	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1295152	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1295161	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1295162	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1295163	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13230369	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1527196	0.88[EUR][1000 genomes]
rs1527202	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1527204	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1528137	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs17150163	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1918859	0.84[CEU][hapmap]
rs2056419	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes]
rs2056420	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs28837728	0.88[EUR][1000 genomes]
rs4721472	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6461225	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6945873	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes]
rs7781532	0.90[EUR][1000 genomes]
rs7798339	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1847175	chr7:16155335-16272661	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1844385	chr7:16168502-16211553	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv887738	chr7:16211553-16284139	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16211400-16211800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr7:16211400-16212200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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